RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 RFC4P35249 363 aa10.28□□□□□ -0.76
TRIM55-204ENST00000353317 NFIXQ14938 502 aa10.28□□□□□ -0.76
TRIM55-204ENST00000353317 SLFNL1Q499Z3 407 aa10.28□□□□□ -0.76
TRIM55-204ENST00000353317 NEUROD6Q96NK8 337 aa10.28□□□□□ -0.76
TRIM55-204ENST00000353317 ZNF652Q9Y2D9 606 aa10.28□□□□□ -0.76
TRIM55-204ENST00000353317 TNRC6CQ9HCJ0 1690 aaKnown RBP10.28□□□□□ -0.76
TRIM55-204ENST00000353317 ZNF609O15014 1411 aa10.28□□□□□ -0.76
TRIM55-204ENST00000353317 ANKRD18BA2A2Z9 1011 aa10.28□□□□□ -0.76
TRIM55-204ENST00000353317 GYS1P13807 737 aa10.28□□□□□ -0.76
TRIM55-204ENST00000353317 SLC27A3Q5K4L6 730 aa10.28□□□□□ -0.76
TRIM55-204ENST00000353317 AKAP11Q9UKA4 1901 aa10.28□□□□□ -0.76
TRIM55-204ENST00000353317 PLSCR1O15162 318 aa10.27□□□□□ -0.76
TRIM55-204ENST00000353317 LRP5O75197 1615 aa10.27□□□□□ -0.77
TRIM55-204ENST00000353317 TAF5LO75529 589 aa10.27□□□□□ -0.77
TRIM55-204ENST00000353317 MCM5P33992 734 aa10.27□□□□□ -0.77
TRIM55-204ENST00000353317 HSPA4P34932 840 aa10.27□□□□□ -0.77
TRIM55-204ENST00000353317 RBM10P98175 930 aaKnown RBP10.27□□□□□ -0.77
TRIM55-204ENST00000353317 SCARF1Q14162 830 aa10.27□□□□□ -0.77
TRIM55-204ENST00000353317 USP48Q86UV5 1035 aa10.27□□□□□ -0.77
TRIM55-204ENST00000353317 SETDB2Q96T68 719 aa10.27□□□□□ -0.77
TRIM55-204ENST00000353317 TSPY26PQ9H489 355 aa10.27□□□□□ -0.77
TRIM55-204ENST00000353317 CCDC39Q9UFE4 941 aa10.27□□□□□ -0.77
TRIM55-204ENST00000353317 ATP5JP18859 108 aa10.26□□□□□ -0.77
TRIM55-204ENST00000353317 TAF7LQ5H9L4 462 aa10.26□□□□□ -0.77
TRIM55-204ENST00000353317 PI16Q6UXB8 463 aa10.26□□□□□ -0.77
TRIM55-204ENST00000353317 AKT1S1Q96B36 256 aa10.26□□□□□ -0.77
TRIM55-204ENST00000353317 ZMYND15Q9H091 742 aa10.26□□□□□ -0.77
TRIM55-204ENST00000353317 CEP126Q9P2H0 1117 aa10.26□□□□□ -0.77
TRIM55-204ENST00000353317 TM4SF1P30408 202 aa10.26□□□□□ -0.77
TRIM55-204ENST00000353317 SLC10A5Q5PT55 438 aa10.26□□□□□ -0.77
TRIM55-204ENST00000353317 FAM227BQ96M60 508 aa10.26□□□□□ -0.77
TRIM55-204ENST00000353317 GPR108Q9NPR9 543 aa10.26□□□□□ -0.77
TRIM55-204ENST00000353317 A0A1B0GUL6 1792 aa10.26□□□□□ -0.77
TRIM55-204ENST00000353317 CWC27Q6UX04 472 aaKnown RBP10.25□□□□□ -0.77
TRIM55-204ENST00000353317 NBPF5PQ86XG9 351 aaPredicted RBP10.25□□□□□ -0.77
TRIM55-204ENST00000353317 COL23A1Q86Y22 540 aaPredicted RBP10.25□□□□□ -0.77
TRIM55-204ENST00000353317 CELF1Q92879 486 aaKnown RBP10.25□□□□□ -0.77
TRIM55-204ENST00000353317 SYAP1Q96A49 352 aaPredicted RBP10.25□□□□□ -0.77
TRIM55-204ENST00000353317 XAGE2Q96GT9 111 aa10.25□□□□□ -0.77
TRIM55-204ENST00000353317 CNNM1Q9NRU3 951 aa10.25□□□□□ -0.77
TRIM55-204ENST00000353317 WDR33Q9C0J8 1336 aaKnown RBP10.25□□□□□ -0.77
TRIM55-204ENST00000353317 UQCRHLA0A096LP55 91 aa10.25□□□□□ -0.77
TRIM55-204ENST00000353317 UQCRHP07919 91 aa10.25□□□□□ -0.77
TRIM55-204ENST00000353317 DDR1Q08345 913 aa10.25□□□□□ -0.77
TRIM55-204ENST00000353317 SF3B3Q15393 1217 aaKnown RBP10.25□□□□□ -0.77
TRIM55-204ENST00000353317 METTL24Q5JXM2 366 aa10.25□□□□□ -0.77
TRIM55-204ENST00000353317 RPAP1Q9BWH6 1393 aaPredicted RBP10.25□□□□□ -0.77
TRIM55-204ENST00000353317 EPB41L2O43491 1005 aaKnown RBP10.24□□□□□ -0.77
TRIM55-204ENST00000353317 PDE8BO95263 885 aa10.24□□□□□ -0.77
TRIM55-204ENST00000353317 EN1Q05925 392 aaPredicted RBP10.24□□□□□ -0.77
TRIM55-204ENST00000353317 EZH2Q15910 746 aaKnown RBP10.24□□□□□ -0.77
TRIM55-204ENST00000353317 CSPP1Q1MSJ5 1256 aa10.24□□□□□ -0.77
TRIM55-204ENST00000353317 DDX46Q7L014 1031 aaKnown RBP10.24□□□□□ -0.77
TRIM55-204ENST00000353317 CNTROBQ8N137 903 aa10.24□□□□□ -0.77
TRIM55-204ENST00000353317 SNRKQ9NRH2 765 aa10.24□□□□□ -0.77
TRIM55-204ENST00000353317 FAM13BQ9NYF5 915 aa10.24□□□□□ -0.77
TRIM55-204ENST00000353317 RGL2O15211 777 aa10.24□□□□□ -0.77
TRIM55-204ENST00000353317 SGSM2O43147 1006 aa10.24□□□□□ -0.77
TRIM55-204ENST00000353317 FGFR2P21802 821 aa10.24□□□□□ -0.77
TRIM55-204ENST00000353317 CCDC152Q4G0S7 254 aa10.24□□□□□ -0.77
TRIM55-204ENST00000353317 EVI5LQ96CN4 794 aa10.24□□□□□ -0.77
TRIM55-204ENST00000353317 DNAJC2Q99543 621 aaKnown RBP10.24□□□□□ -0.77
TRIM55-204ENST00000353317 LARP6Q9BRS8 491 aaKnown RBP10.24□□□□□ -0.77
TRIM55-204ENST00000353317 FBXO3Q9UK99 471 aa10.24□□□□□ -0.77
TRIM55-204ENST00000353317 CARMIL3Q8ND23 1372 aa10.24□□□□□ -0.77
TRIM55-204ENST00000353317 RAD50Q92878 1312 aa10.24□□□□□ -0.77
TRIM55-204ENST00000353317 A0A0D9SFI3 127 aa10.23□□□□□ -0.77
TRIM55-204ENST00000353317 GTF2E1P29083 439 aaPredicted RBP10.23□□□□□ -0.77
TRIM55-204ENST00000353317 RASEFQ8IZ41 740 aa10.23□□□□□ -0.77
TRIM55-204ENST00000353317 GPATCH3Q96I76 525 aa10.23□□□□□ -0.77
TRIM55-204ENST00000353317 TTC14Q96N46 770 aa10.23□□□□□ -0.77
TRIM55-204ENST00000353317 HAUS7Q99871 368 aa10.23□□□□□ -0.77
TRIM55-204ENST00000353317 SNX14Q9Y5W7 946 aa10.23□□□□□ -0.77
TRIM55-204ENST00000353317 RTL9Q8NET4 1388 aa10.23□□□□□ -0.77
TRIM55-204ENST00000353317 ADRA2BP18089 450 aa10.23□□□□□ -0.77
TRIM55-204ENST00000353317 PTH1RQ03431 593 aa10.23□□□□□ -0.77
TRIM55-204ENST00000353317 NMIQ13287 307 aaPredicted RBP10.23□□□□□ -0.77
TRIM55-204ENST00000353317 ATP2B3Q16720 1220 aa10.23□□□□□ -0.77
TRIM55-204ENST00000353317 PRR5LQ6MZQ0 368 aa10.23□□□□□ -0.77
TRIM55-204ENST00000353317 TPTE2Q6XPS3 522 aa10.23□□□□□ -0.77
TRIM55-204ENST00000353317 TMEM87AQ8NBN3 555 aa10.23□□□□□ -0.77
TRIM55-204ENST00000353317 SEC62Q99442 399 aaKnown RBP10.23□□□□□ -0.77
TRIM55-204ENST00000353317 PDGFDQ9GZP0 370 aaPredicted RBP10.23□□□□□ -0.77
TRIM55-204ENST00000353317 TFCP2L1Q9NZI6 479 aa10.23□□□□□ -0.77
TRIM55-204ENST00000353317 CNPY2Q9Y2B0 182 aa10.23□□□□□ -0.77
TRIM55-204ENST00000353317 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.23□□□□□ -0.77
TRIM55-204ENST00000353317 PTMAP06454 111 aaKnown RBP10.22□□□□□ -0.77
TRIM55-204ENST00000353317 AK2P54819 239 aa10.22□□□□□ -0.77
TRIM55-204ENST00000353317 COL9A3Q14050 684 aaPredicted RBP10.22□□□□□ -0.77
TRIM55-204ENST00000353317 CAMKK2Q96RR4 588 aa10.22□□□□□ -0.77
TRIM55-204ENST00000353317 LSG1Q9H089 658 aaKnown RBP10.22□□□□□ -0.77
TRIM55-204ENST00000353317 GOLIM4O00461 696 aa10.22□□□□□ -0.77
TRIM55-204ENST00000353317 MCAMP43121 646 aa10.22□□□□□ -0.77
TRIM55-204ENST00000353317 PHKA1P46020 1223 aa10.22□□□□□ -0.77
TRIM55-204ENST00000353317 CHRNDQ07001 517 aa10.22□□□□□ -0.77
TRIM55-204ENST00000353317 TPRNQ4KMQ1 711 aa10.22□□□□□ -0.77
TRIM55-204ENST00000353317 DEFB132Q7Z7B7 95 aa10.22□□□□□ -0.77
TRIM55-204ENST00000353317 ZNF589Q86UQ0 364 aaPredicted RBP10.22□□□□□ -0.77
TRIM55-204ENST00000353317 MPNDQ8N594 471 aa10.22□□□□□ -0.77
TRIM55-204ENST00000353317 PNPLA7Q6ZV29 1317 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms