RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 ZBTB7BO15156 539 aaPredicted RBP17.46■□□□□ 0.39
LIMS1-201ENST00000332345 SRGAP3O43295 1099 aa17.46■□□□□ 0.39
LIMS1-201ENST00000332345 VIL1P09327 827 aaKnown RBP17.46■□□□□ 0.39
LIMS1-201ENST00000332345 RPS12P25398 132 aaKnown RBP17.46■□□□□ 0.39
LIMS1-201ENST00000332345 GMPSP49915 693 aaPredicted RBP17.46■□□□□ 0.39
LIMS1-201ENST00000332345 SCNN1DP51172 638 aa17.46■□□□□ 0.39
LIMS1-201ENST00000332345 TXNRD3Q86VQ6 643 aa17.46■□□□□ 0.39
LIMS1-201ENST00000332345 PANK1Q8TE04 598 aa17.46■□□□□ 0.39
LIMS1-201ENST00000332345 DPF2Q92785 391 aa17.46■□□□□ 0.39
LIMS1-201ENST00000332345 GPRC5DQ9NZD1 345 aa17.46■□□□□ 0.39
LIMS1-201ENST00000332345 USP17L3A6NCW0 530 aa17.45■□□□□ 0.38
LIMS1-201ENST00000332345 USP17L4A6NCW7 530 aa17.45■□□□□ 0.38
LIMS1-201ENST00000332345 H7C1D1 291 aa17.45■□□□□ 0.38
LIMS1-201ENST00000332345 SNAP23O00161 211 aa17.45■□□□□ 0.38
LIMS1-201ENST00000332345 PDE8BO95263 885 aa17.45■□□□□ 0.38
LIMS1-201ENST00000332345 EPS15P42566 896 aa17.45■□□□□ 0.38
LIMS1-201ENST00000332345 MTX1Q13505 466 aa17.45■□□□□ 0.38
LIMS1-201ENST00000332345 EAPPQ56P03 285 aaPredicted RBP17.45■□□□□ 0.38
LIMS1-201ENST00000332345 USP17L1Q7RTZ2 530 aa17.45■□□□□ 0.38
LIMS1-201ENST00000332345 CNOT7Q9UIV1 285 aaKnown RBP17.45■□□□□ 0.38
LIMS1-201ENST00000332345 CIAO1O76071 339 aa17.44■□□□□ 0.38
LIMS1-201ENST00000332345 USP50Q70EL3 339 aaPredicted RBP17.44■□□□□ 0.38
LIMS1-201ENST00000332345 ZNF804AQ7Z570 1209 aa17.44■□□□□ 0.38
LIMS1-201ENST00000332345 LDHDQ86WU2 507 aa17.44■□□□□ 0.38
LIMS1-201ENST00000332345 CHMP4BQ9H444 224 aaKnown RBP17.44■□□□□ 0.38
LIMS1-201ENST00000332345 COPRSQ9NQ92 184 aa17.44■□□□□ 0.38
LIMS1-201ENST00000332345 ADARB2Q9NS39 739 aaKnown RBP17.44■□□□□ 0.38
LIMS1-201ENST00000332345 CLEC11AQ9Y240 323 aa17.44■□□□□ 0.38
LIMS1-201ENST00000332345 ZBTB12Q9Y330 459 aaPredicted RBP17.44■□□□□ 0.38
LIMS1-201ENST00000332345 KLRK1P26718 216 aa17.43■□□□□ 0.38
LIMS1-201ENST00000332345 IL15P40933 162 aaPredicted RBP17.43■□□□□ 0.38
LIMS1-201ENST00000332345 CHADLQ6NUI6 762 aa17.43■□□□□ 0.38
LIMS1-201ENST00000332345 AGBL3Q8NEM8 1001 aa17.43■□□□□ 0.38
LIMS1-201ENST00000332345 SIL1Q9H173 461 aa17.43■□□□□ 0.38
LIMS1-201ENST00000332345 CD209Q9NNX6 404 aa17.43■□□□□ 0.38
LIMS1-201ENST00000332345 CEP126Q9P2H0 1117 aa17.43■□□□□ 0.38
LIMS1-201ENST00000332345 PDE3AQ14432 1141 aa17.42■□□□□ 0.38
LIMS1-201ENST00000332345 STRIP1Q5VSL9 837 aa17.42■□□□□ 0.38
LIMS1-201ENST00000332345 TTLL5Q6EMB2 1281 aa17.42■□□□□ 0.38
LIMS1-201ENST00000332345 RSBN1LQ6PCB5 846 aaPredicted RBP17.42■□□□□ 0.38
LIMS1-201ENST00000332345 SCN9AQ15858 1988 aa17.42■□□□□ 0.38
LIMS1-201ENST00000332345 IRS2Q9Y4H2 1338 aa17.42■□□□□ 0.38
LIMS1-201ENST00000332345 A0A1B0GUL6 1792 aa17.41■□□□□ 0.38
LIMS1-201ENST00000332345 IFIT1P09914 478 aaKnown RBP17.41■□□□□ 0.38
LIMS1-201ENST00000332345 HIBADHP31937 336 aaKnown RBP17.41■□□□□ 0.38
LIMS1-201ENST00000332345 ATP8B2P98198 1209 aa17.41■□□□□ 0.38
LIMS1-201ENST00000332345 MVPQ14764 893 aaKnown RBP17.41■□□□□ 0.38
LIMS1-201ENST00000332345 PUM3Q15397 648 aaKnown RBP17.41■□□□□ 0.38
LIMS1-201ENST00000332345 CAVIN4Q5BKX8 364 aa17.41■□□□□ 0.38
LIMS1-201ENST00000332345 ATG9AQ7Z3C6 839 aa17.41■□□□□ 0.38
LIMS1-201ENST00000332345 VPS37DQ86XT2 251 aa17.41■□□□□ 0.38
LIMS1-201ENST00000332345 VGLL2Q8N8G2 317 aa17.41■□□□□ 0.38
LIMS1-201ENST00000332345 FBXW7Q969H0 707 aa17.41■□□□□ 0.38
LIMS1-201ENST00000332345 DDX19BQ9UMR2 479 aa17.41■□□□□ 0.38
LIMS1-201ENST00000332345 PA2G4Q9UQ80 394 aaKnown RBP17.41■□□□□ 0.38
LIMS1-201ENST00000332345 POTEIP0CG38 1075 aa17.4■□□□□ 0.38
LIMS1-201ENST00000332345 POTEJP0CG39 1038 aa17.4■□□□□ 0.38
LIMS1-201ENST00000332345 IL1R1P14778 569 aa17.4■□□□□ 0.38
LIMS1-201ENST00000332345 MICALL2Q8IY33 904 aa17.4■□□□□ 0.38
LIMS1-201ENST00000332345 FAM84BQ96KN1 310 aaPredicted RBP17.4■□□□□ 0.38
LIMS1-201ENST00000332345 RNF216Q9NWF9 866 aaPredicted RBP17.4■□□□□ 0.38
LIMS1-201ENST00000332345 COG6Q9Y2V7 657 aa17.4■□□□□ 0.38
LIMS1-201ENST00000332345 PNMA6EA0A0J9YXQ4 647 aa17.39■□□□□ 0.37
LIMS1-201ENST00000332345 HSPA6P17066 643 aa17.39■□□□□ 0.37
LIMS1-201ENST00000332345 MMP14P50281 582 aa17.39■□□□□ 0.37
LIMS1-201ENST00000332345 GTF2IP78347 998 aa17.39■□□□□ 0.37
LIMS1-201ENST00000332345 G3BP1Q13283 466 aaKnown RBP eCLIP17.39■□□□□ 0.37
LIMS1-201ENST00000332345 DACT2Q5SW24 774 aa17.39■□□□□ 0.37
LIMS1-201ENST00000332345 LPIN2Q92539 896 aa17.39■□□□□ 0.37
LIMS1-201ENST00000332345 PSME4Q14997 1843 aa17.39■□□□□ 0.37
LIMS1-201ENST00000332345 MYO3BQ8WXR4 1341 aa17.39■□□□□ 0.37
LIMS1-201ENST00000332345 SASH1O94885 1247 aa17.38■□□□□ 0.37
LIMS1-201ENST00000332345 USP17L8P0C7I0 530 aa17.38■□□□□ 0.37
LIMS1-201ENST00000332345 SLC5A1P13866 664 aa17.38■□□□□ 0.37
LIMS1-201ENST00000332345 FGFR2P21802 821 aa17.38■□□□□ 0.37
LIMS1-201ENST00000332345 GYG1P46976 350 aa17.38■□□□□ 0.37
LIMS1-201ENST00000332345 FBXO33Q7Z6M2 555 aa17.38■□□□□ 0.37
LIMS1-201ENST00000332345 OGFOD1Q8N543 542 aa17.38■□□□□ 0.37
LIMS1-201ENST00000332345 GMLQ99445 158 aa17.38■□□□□ 0.37
LIMS1-201ENST00000332345 C1orf115Q9H7X2 142 aa17.38■□□□□ 0.37
LIMS1-201ENST00000332345 CNTROBQ8N137 903 aa17.37■□□□□ 0.37
LIMS1-201ENST00000332345 TDRD7Q8NHU6 1098 aaKnown RBP17.37■□□□□ 0.37
LIMS1-201ENST00000332345 SSH3Q8TE77 659 aa17.37■□□□□ 0.37
LIMS1-201ENST00000332345 ZC3H15Q8WU90 426 aaKnown RBP17.37■□□□□ 0.37
LIMS1-201ENST00000332345 AKAP2Q9Y2D5 859 aa17.37■□□□□ 0.37
LIMS1-201ENST00000332345 FRAT2O75474 233 aaPredicted RBP17.36■□□□□ 0.37
LIMS1-201ENST00000332345 APLP1P51693 650 aa17.36■□□□□ 0.37
LIMS1-201ENST00000332345 POLA2Q14181 598 aa17.36■□□□□ 0.37
LIMS1-201ENST00000332345 ATP2B3Q16720 1220 aa17.36■□□□□ 0.37
LIMS1-201ENST00000332345 RBM26Q5T8P6 1007 aaKnown RBP17.36■□□□□ 0.37
LIMS1-201ENST00000332345 SAMD7Q7Z3H4 446 aa17.36■□□□□ 0.37
LIMS1-201ENST00000332345 ZNF609O15014 1411 aa17.36■□□□□ 0.37
LIMS1-201ENST00000332345 SHTN1A0MZ66 631 aa17.35■□□□□ 0.37
LIMS1-201ENST00000332345 BCAMP50895 628 aa17.35■□□□□ 0.37
LIMS1-201ENST00000332345 ZNF280AP59817 542 aaPredicted RBP17.35■□□□□ 0.37
LIMS1-201ENST00000332345 FKBP1AP62942 108 aaKnown RBP17.35■□□□□ 0.37
LIMS1-201ENST00000332345 TBC1D10BQ4KMP7 808 aaPredicted RBP17.35■□□□□ 0.37
LIMS1-201ENST00000332345 MAP1SQ66K74 1059 aaPredicted RBP17.35■□□□□ 0.37
LIMS1-201ENST00000332345 MXD3Q9BW11 206 aa17.35■□□□□ 0.37
LIMS1-201ENST00000332345 ZBTB40Q9NUA8 1239 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms