RNA–Protein interactions for RNA: ENST00000331148.5

CLSTN3-202, Transcript of calsyntenin 3, humanhuman

TSL 1 (best)

Gene CLSTN3, Length 2,288 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-202ENST00000331148 SNRKQ9NRH2 765 aa21.16■□□□□ 0.98
CLSTN3-202ENST00000331148 COL16A1Q07092 1604 aaPredicted RBP21.16■□□□□ 0.98
CLSTN3-202ENST00000331148 UBAP1LF5GYI3 381 aa21.15■□□□□ 0.98
CLSTN3-202ENST00000331148 IFIT2P09913 472 aaKnown RBP21.15■□□□□ 0.98
CLSTN3-202ENST00000331148 PNMA6AP0CW24 399 aaPredicted RBP21.15■□□□□ 0.98
CLSTN3-202ENST00000331148 E4F1Q66K89 784 aaPredicted RBP21.15■□□□□ 0.98
CLSTN3-202ENST00000331148 CFAP45Q9UL16 551 aa21.15■□□□□ 0.98
CLSTN3-202ENST00000331148 HIP1O00291 1037 aa21.15■□□□□ 0.98
CLSTN3-202ENST00000331148 PPP1R13BQ96KQ4 1090 aa21.15■□□□□ 0.98
CLSTN3-202ENST00000331148 OSBPL5Q9H0X9 879 aaPredicted RBP21.15■□□□□ 0.98
CLSTN3-202ENST00000331148 ZKSCAN7Q9P0L1 754 aaPredicted RBP21.15■□□□□ 0.98
CLSTN3-202ENST00000331148 HNRNPH2P55795 449 aaKnown RBP21.14■□□□□ 0.97
CLSTN3-202ENST00000331148 BEND3Q5T5X7 828 aa21.14■□□□□ 0.97
CLSTN3-202ENST00000331148 GOLPH3LQ9H4A5 285 aa21.14■□□□□ 0.97
CLSTN3-202ENST00000331148 ZSCAN16Q9H4T2 348 aaPredicted RBP21.14■□□□□ 0.97
CLSTN3-202ENST00000331148 ANO10Q9NW15 660 aa21.14■□□□□ 0.97
CLSTN3-202ENST00000331148 A0A087WWV3 80 aa21.13■□□□□ 0.97
CLSTN3-202ENST00000331148 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.13■□□□□ 0.97
CLSTN3-202ENST00000331148 PLA2G4AP47712 749 aa21.13■□□□□ 0.97
CLSTN3-202ENST00000331148 CABP4P57796 275 aa21.13■□□□□ 0.97
CLSTN3-202ENST00000331148 SLC39A6Q13433 755 aa21.13■□□□□ 0.97
CLSTN3-202ENST00000331148 NBPF11Q86T75 865 aa21.13■□□□□ 0.97
CLSTN3-202ENST00000331148 CCAR1Q8IX12 1150 aaKnown RBP21.13■□□□□ 0.97
CLSTN3-202ENST00000331148 AOPEPQ8N6M6 819 aa21.13■□□□□ 0.97
CLSTN3-202ENST00000331148 DDX11Q96FC9 970 aa21.13■□□□□ 0.97
CLSTN3-202ENST00000331148 MRC1P22897 1456 aa21.13■□□□□ 0.97
CLSTN3-202ENST00000331148 SYT10Q6XYQ8 523 aa21.13■□□□□ 0.97
CLSTN3-202ENST00000331148 CEP57L1Q8IYX8 460 aa21.13■□□□□ 0.97
CLSTN3-202ENST00000331148 CHPF2Q9P2E5 772 aa21.13■□□□□ 0.97
CLSTN3-202ENST00000331148 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.13■□□□□ 0.97
CLSTN3-202ENST00000331148 A0A0D9SFI3 127 aa21.12■□□□□ 0.97
CLSTN3-202ENST00000331148 H3BQV1 296 aa21.12■□□□□ 0.97
CLSTN3-202ENST00000331148 ARHGAP29Q52LW3 1261 aa21.12■□□□□ 0.97
CLSTN3-202ENST00000331148 IFFO2Q5TF58 517 aa21.12■□□□□ 0.97
CLSTN3-202ENST00000331148 IMPACTQ9P2X3 320 aa21.12■□□□□ 0.97
CLSTN3-202ENST00000331148 CEBPZQ03701 1054 aaKnown RBP21.12■□□□□ 0.97
CLSTN3-202ENST00000331148 MTX1Q13505 466 aa21.12■□□□□ 0.97
CLSTN3-202ENST00000331148 DNAAF4Q8WXU2 420 aa21.12■□□□□ 0.97
CLSTN3-202ENST00000331148 TSPYL1Q9H0U9 437 aa21.12■□□□□ 0.97
CLSTN3-202ENST00000331148 DBF4Q9UBU7 674 aaPredicted RBP21.12■□□□□ 0.97
CLSTN3-202ENST00000331148 NKX1-1Q15270 411 aaPredicted RBP21.11■□□□□ 0.97
CLSTN3-202ENST00000331148 AACSQ86V21 672 aa21.11■□□□□ 0.97
CLSTN3-202ENST00000331148 MED23Q9ULK4 1368 aa21.11■□□□□ 0.97
CLSTN3-202ENST00000331148 PSDA5PKW4 1024 aaPredicted RBP21.11■□□□□ 0.97
CLSTN3-202ENST00000331148 CCDC73Q6ZRK6 1079 aa21.11■□□□□ 0.97
CLSTN3-202ENST00000331148 ZRANB2O95218 330 aaKnown RBP eCLIP21.1■□□□□ 0.97
CLSTN3-202ENST00000331148 ADD1P35611 737 aaKnown RBP21.1■□□□□ 0.97
CLSTN3-202ENST00000331148 ERC1Q8IUD2 1116 aa21.1■□□□□ 0.97
CLSTN3-202ENST00000331148 TTC5Q8N0Z6 440 aa21.1■□□□□ 0.97
CLSTN3-202ENST00000331148 CCDC150Q8NCX0 1101 aa21.1■□□□□ 0.97
CLSTN3-202ENST00000331148 HMG20BQ9P0W2 317 aa21.1■□□□□ 0.97
CLSTN3-202ENST00000331148 PRAMEF22A3QJZ6 481 aa21.09■□□□□ 0.97
CLSTN3-202ENST00000331148 KINO60870 393 aaKnown RBP21.09■□□□□ 0.97
CLSTN3-202ENST00000331148 ADAMTS2O95450 1211 aa21.09■□□□□ 0.97
CLSTN3-202ENST00000331148 TRERF1Q96PN7 1200 aa21.09■□□□□ 0.97
CLSTN3-202ENST00000331148 RCOR1Q9UKL0 485 aa21.09■□□□□ 0.97
CLSTN3-202ENST00000331148 ERVV-2B6SEH9 535 aa21.09■□□□□ 0.97
CLSTN3-202ENST00000331148 SYTL4Q96C24 671 aaPredicted RBP21.09■□□□□ 0.97
CLSTN3-202ENST00000331148 PA2G4Q9UQ80 394 aaKnown RBP21.09■□□□□ 0.97
CLSTN3-202ENST00000331148 JCADQ9P266 1359 aa21.09■□□□□ 0.97
CLSTN3-202ENST00000331148 PI4KAP2A4QPH2 592 aa21.08■□□□□ 0.97
CLSTN3-202ENST00000331148 KCNJ6P48051 423 aa21.08■□□□□ 0.97
CLSTN3-202ENST00000331148 TSGA10IPQ3SY00 556 aa21.08■□□□□ 0.97
CLSTN3-202ENST00000331148 ARMCX5Q6P1M9 558 aa21.08■□□□□ 0.97
CLSTN3-202ENST00000331148 PI4KAP1Q8N8J0 262 aa21.08■□□□□ 0.97
CLSTN3-202ENST00000331148 ENGASEQ8NFI3 743 aa21.08■□□□□ 0.97
CLSTN3-202ENST00000331148 FTOQ9C0B1 505 aaKnown RBP eCLIP21.08■□□□□ 0.97
CLSTN3-202ENST00000331148 NAT10Q9H0A0 1025 aaKnown RBP21.08■□□□□ 0.97
CLSTN3-202ENST00000331148 TUBB4AP04350 444 aa21.08■□□□□ 0.96
CLSTN3-202ENST00000331148 FAM160A1Q05DH4 1040 aa21.08■□□□□ 0.96
CLSTN3-202ENST00000331148 ARGLU1Q9NWB6 273 aaPredicted RBP21.08■□□□□ 0.96
CLSTN3-202ENST00000331148 RAD51AP2Q09MP3 1159 aa21.07■□□□□ 0.96
CLSTN3-202ENST00000331148 TEX35Q5T0J7 233 aa21.07■□□□□ 0.96
CLSTN3-202ENST00000331148 TMCO3Q6UWJ1 677 aa21.07■□□□□ 0.96
CLSTN3-202ENST00000331148 ZNF496Q96IT1 587 aaPredicted RBP21.07■□□□□ 0.96
CLSTN3-202ENST00000331148 ORC3Q9UBD5 711 aaPredicted RBP21.07■□□□□ 0.96
CLSTN3-202ENST00000331148 SHANK3Q9BYB0 1731 aa21.07■□□□□ 0.96
CLSTN3-202ENST00000331148 FSD1Q9BTV5 496 aa21.07■□□□□ 0.96
CLSTN3-202ENST00000331148 FEZ2Q9UHY8 353 aaPredicted RBP21.07■□□□□ 0.96
CLSTN3-202ENST00000331148 ANXA1P04083 346 aa21.06■□□□□ 0.96
CLSTN3-202ENST00000331148 TPM4P67936 248 aa21.06■□□□□ 0.96
CLSTN3-202ENST00000331148 MAPK8IP2Q13387 824 aaPredicted RBP21.06■□□□□ 0.96
CLSTN3-202ENST00000331148 TMC6Q7Z403 805 aa21.06■□□□□ 0.96
CLSTN3-202ENST00000331148 ZNF589Q86UQ0 364 aaPredicted RBP21.06■□□□□ 0.96
CLSTN3-202ENST00000331148 FBXW7Q969H0 707 aa21.06■□□□□ 0.96
CLSTN3-202ENST00000331148 NUTM2BA6NNL0 878 aaPredicted RBP21.06■□□□□ 0.96
CLSTN3-202ENST00000331148 NUTM2EB1AL46 878 aaPredicted RBP21.06■□□□□ 0.96
CLSTN3-202ENST00000331148 SFPQP23246 707 aaKnown RBP eCLIP21.06■□□□□ 0.96
CLSTN3-202ENST00000331148 NUTM2AQ8IVF1 878 aaPredicted RBP21.06■□□□□ 0.96
CLSTN3-202ENST00000331148 NEK11Q8NG66 645 aa21.06■□□□□ 0.96
CLSTN3-202ENST00000331148 ERCC4Q92889 916 aaPredicted RBP21.06■□□□□ 0.96
CLSTN3-202ENST00000331148 FMNL2Q96PY5 1086 aa21.06■□□□□ 0.96
CLSTN3-202ENST00000331148 GORABQ5T7V8 394 aa21.05■□□□□ 0.96
CLSTN3-202ENST00000331148 UBXN4Q92575 508 aa21.05■□□□□ 0.96
CLSTN3-202ENST00000331148 TRIM34Q9BYJ4 488 aa21.05■□□□□ 0.96
CLSTN3-202ENST00000331148 XPO4Q9C0E2 1151 aaKnown RBP21.05■□□□□ 0.96
CLSTN3-202ENST00000331148 POLR3GO15318 223 aaPredicted RBP21.04■□□□□ 0.96
CLSTN3-202ENST00000331148 SMC2O95347 1197 aa21.04■□□□□ 0.96
CLSTN3-202ENST00000331148 SNRPA1P09661 255 aaKnown RBP21.04■□□□□ 0.96
CLSTN3-202ENST00000331148 HSP90B1P14625 803 aaKnown RBP21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms