RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 HSPA1LP34931 641 aa13.72□□□□□ -0.21
SHMT2-201ENST00000328923 CCT2P78371 535 aaKnown RBP13.72□□□□□ -0.21
SHMT2-201ENST00000328923 ADCY2Q08462 1091 aa13.72□□□□□ -0.21
SHMT2-201ENST00000328923 DHX8Q14562 1220 aaKnown RBP13.72□□□□□ -0.21
SHMT2-201ENST00000328923 FMNL3Q8IVF7 1028 aa13.72□□□□□ -0.21
SHMT2-201ENST00000328923 PIK3R5Q8WYR1 880 aa13.72□□□□□ -0.21
SHMT2-201ENST00000328923 KCNB2Q92953 911 aa13.72□□□□□ -0.21
SHMT2-201ENST00000328923 FAM210AQ96ND0 272 aa13.72□□□□□ -0.21
SHMT2-201ENST00000328923 TACO1Q9BSH4 297 aaKnown RBP13.72□□□□□ -0.21
SHMT2-201ENST00000328923 TRIM6Q9C030 488 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-201ENST00000328923 NUCKS1Q9H1E3 243 aaKnown RBP13.72□□□□□ -0.21
SHMT2-201ENST00000328923 NUP62CLQ9H1M0 184 aa13.72□□□□□ -0.21
SHMT2-201ENST00000328923 EMILIN1Q9Y6C2 1016 aa13.72□□□□□ -0.21
SHMT2-201ENST00000328923 SALL3Q9BXA9 1300 aa13.72□□□□□ -0.21
SHMT2-201ENST00000328923 APOBRQ0VD83 1088 aa13.71□□□□□ -0.21
SHMT2-201ENST00000328923 LONRF2Q1L5Z9 754 aa13.71□□□□□ -0.21
SHMT2-201ENST00000328923 ZNF483Q8TF39 744 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-201ENST00000328923 THUMPD2Q9BTF0 503 aaKnown RBP13.71□□□□□ -0.21
SHMT2-201ENST00000328923 DNAI1Q9UI46 699 aa13.71□□□□□ -0.21
SHMT2-201ENST00000328923 ATP6V1DQ9Y5K8 247 aa13.71□□□□□ -0.21
SHMT2-201ENST00000328923 EXOC5O00471 708 aa13.71□□□□□ -0.21
SHMT2-201ENST00000328923 DNM1Q05193 864 aaKnown RBP13.71□□□□□ -0.21
SHMT2-201ENST00000328923 GNL2Q13823 731 aaKnown RBP13.71□□□□□ -0.21
SHMT2-201ENST00000328923 DNAJC25Q9H1X3 360 aa13.71□□□□□ -0.21
SHMT2-201ENST00000328923 A1CFQ9NQ94 594 aaKnown RBP13.71□□□□□ -0.21
SHMT2-201ENST00000328923 ELL2O00472 640 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-201ENST00000328923 SRGAP3O43295 1099 aa13.7□□□□□ -0.22
SHMT2-201ENST00000328923 ZNF165P49910 485 aa13.7□□□□□ -0.22
SHMT2-201ENST00000328923 MCM6Q14566 821 aa13.7□□□□□ -0.22
SHMT2-201ENST00000328923 PARD6BQ9BYG5 372 aa13.7□□□□□ -0.22
SHMT2-201ENST00000328923 PALD1Q9ULE6 856 aa13.7□□□□□ -0.22
SHMT2-201ENST00000328923 USP6P35125 1406 aa13.7□□□□□ -0.22
SHMT2-201ENST00000328923 RGPD8O14715 1765 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-201ENST00000328923 MAP2K7O14733 419 aa13.7□□□□□ -0.22
SHMT2-201ENST00000328923 AP1G2O75843 785 aa13.7□□□□□ -0.22
SHMT2-201ENST00000328923 URI1O94763 535 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-201ENST00000328923 SETQ01105 290 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-201ENST00000328923 CNNM3Q8NE01 707 aa13.7□□□□□ -0.22
SHMT2-201ENST00000328923 CLIC6Q96NY7 704 aa13.7□□□□□ -0.22
SHMT2-201ENST00000328923 PRDM16Q9HAZ2 1276 aa13.7□□□□□ -0.22
SHMT2-201ENST00000328923 CD248Q9HCU0 757 aa13.7□□□□□ -0.22
SHMT2-201ENST00000328923 TTC21BQ7Z4L5 1316 aa13.7□□□□□ -0.22
SHMT2-201ENST00000328923 F13A1P00488 732 aa13.69□□□□□ -0.22
SHMT2-201ENST00000328923 GNAI3P08754 354 aa13.69□□□□□ -0.22
SHMT2-201ENST00000328923 NF2P35240 595 aa13.69□□□□□ -0.22
SHMT2-201ENST00000328923 GRIK3Q13003 919 aa13.69□□□□□ -0.22
SHMT2-201ENST00000328923 ARMC3Q5W041 872 aa13.69□□□□□ -0.22
SHMT2-201ENST00000328923 MED1Q15648 1581 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-201ENST00000328923 FANCGO15287 622 aa13.69□□□□□ -0.22
SHMT2-201ENST00000328923 MYBL2P10244 700 aa13.69□□□□□ -0.22
SHMT2-201ENST00000328923 KCNA6P17658 529 aa13.69□□□□□ -0.22
SHMT2-201ENST00000328923 IBSPP21815 317 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-201ENST00000328923 ATP2B2Q01814 1243 aa13.69□□□□□ -0.22
SHMT2-201ENST00000328923 HOMER1Q86YM7 354 aa13.69□□□□□ -0.22
SHMT2-201ENST00000328923 UPF3BQ9BZI7 483 aaKnown RBP13.69□□□□□ -0.22
SHMT2-201ENST00000328923 IL13P35225 146 aa13.68□□□□□ -0.22
SHMT2-201ENST00000328923 RRS1Q15050 365 aaKnown RBP13.68□□□□□ -0.22
SHMT2-201ENST00000328923 GPR161Q8N6U8 529 aaKnown RBP13.68□□□□□ -0.22
SHMT2-201ENST00000328923 ZKSCAN4Q969J2 545 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-201ENST00000328923 AOX1Q06278 1338 aa13.68□□□□□ -0.22
SHMT2-201ENST00000328923 FRMD3A2A2Y4 597 aa13.68□□□□□ -0.22
SHMT2-201ENST00000328923 STX6O43752 255 aa13.68□□□□□ -0.22
SHMT2-201ENST00000328923 DTNBO60941 627 aa13.68□□□□□ -0.22
SHMT2-201ENST00000328923 PHACTR2O75167 634 aa13.68□□□□□ -0.22
SHMT2-201ENST00000328923 CHMLP26374 656 aa13.68□□□□□ -0.22
SHMT2-201ENST00000328923 CCDC26Q8TAB7 109 aa13.68□□□□□ -0.22
SHMT2-201ENST00000328923 TNMDQ9H2S6 317 aa13.68□□□□□ -0.22
SHMT2-201ENST00000328923 CPSF2Q9P2I0 782 aaKnown RBP13.68□□□□□ -0.22
SHMT2-201ENST00000328923 OVOS2A0A0J9YW53 1432 aa13.68□□□□□ -0.22
SHMT2-201ENST00000328923 OVOS2Q6IE36 1432 aa13.68□□□□□ -0.22
SHMT2-201ENST00000328923 SYT1P21579 422 aa13.67□□□□□ -0.22
SHMT2-201ENST00000328923 LRRFIP1Q32MZ4 808 aaKnown RBP13.67□□□□□ -0.22
SHMT2-201ENST00000328923 MRFAP1L1Q96HT8 127 aa13.67□□□□□ -0.22
SHMT2-201ENST00000328923 PSMD1Q99460 953 aa13.67□□□□□ -0.22
SHMT2-201ENST00000328923 MEIS3Q99687 375 aa13.67□□□□□ -0.22
SHMT2-201ENST00000328923 FAM107BQ9H098 131 aa13.67□□□□□ -0.22
SHMT2-201ENST00000328923 ODF2LQ9ULJ1 636 aa13.67□□□□□ -0.22
SHMT2-201ENST00000328923 SOS1Q07889 1333 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-201ENST00000328923 NALCNQ8IZF0 1738 aa13.67□□□□□ -0.22
SHMT2-201ENST00000328923 RTN2O75298 545 aa13.66□□□□□ -0.22
SHMT2-201ENST00000328923 SKAP2O75563 359 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-201ENST00000328923 HMOX1P09601 288 aa13.66□□□□□ -0.22
SHMT2-201ENST00000328923 ETF1P62495 437 aaKnown RBP13.66□□□□□ -0.22
SHMT2-201ENST00000328923 PSMD2Q13200 908 aa13.66□□□□□ -0.22
SHMT2-201ENST00000328923 CRYMQ14894 314 aa13.66□□□□□ -0.22
SHMT2-201ENST00000328923 ANO2Q9NQ90 1003 aa13.66□□□□□ -0.22
SHMT2-201ENST00000328923 STAP2Q9UGK3 403 aa13.66□□□□□ -0.22
SHMT2-201ENST00000328923 HSPA4P34932 840 aa13.66□□□□□ -0.22
SHMT2-201ENST00000328923 C1QTNF12Q5T7M4 302 aa13.66□□□□□ -0.22
SHMT2-201ENST00000328923 SH3GL3Q99963 347 aa13.66□□□□□ -0.22
SHMT2-201ENST00000328923 RDXP35241 583 aaKnown RBP13.65□□□□□ -0.22
SHMT2-201ENST00000328923 SARM1Q6SZW1 724 aa13.65□□□□□ -0.22
SHMT2-201ENST00000328923 DACT1Q9NYF0 836 aa13.65□□□□□ -0.22
SHMT2-201ENST00000328923 PARP3Q9Y6F1 533 aa13.65□□□□□ -0.22
SHMT2-201ENST00000328923 FAM169AQ9Y6X4 670 aa13.65□□□□□ -0.22
SHMT2-201ENST00000328923 PHLPP2Q6ZVD8 1323 aa13.65□□□□□ -0.22
SHMT2-201ENST00000328923 COQ9O75208 318 aa13.65□□□□□ -0.22
SHMT2-201ENST00000328923 PDE6BP35913 854 aa13.65□□□□□ -0.22
SHMT2-201ENST00000328923 PREPLQ4J6C6 727 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-201ENST00000328923 TTC41PQ6P2S7 1318 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms