RNA–Protein interactions for RNA: ENST00000321105.9

TOP3A-201, Transcript of DNA topoisomerase III alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOP3A, Length 4,056 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-201ENST00000321105 ERVV-2B6SEH9 535 aa12.82□□□□□ -0.36
TOP3A-201ENST00000321105 LARGE1O95461 756 aa12.82□□□□□ -0.36
TOP3A-201ENST00000321105 TTF1Q15361 905 aaPredicted RBP12.82□□□□□ -0.36
TOP3A-201ENST00000321105 NAA16Q6N069 864 aaPredicted RBP12.82□□□□□ -0.36
TOP3A-201ENST00000321105 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.82□□□□□ -0.36
TOP3A-201ENST00000321105 PHKBQ93100 1093 aa12.82□□□□□ -0.36
TOP3A-201ENST00000321105 RTCBQ9Y3I0 505 aaKnown RBP12.82□□□□□ -0.36
TOP3A-201ENST00000321105 SETBP1Q9Y6X0 1596 aa12.81□□□□□ -0.36
TOP3A-201ENST00000321105 MROH2AA6NES4 1674 aa12.81□□□□□ -0.36
TOP3A-201ENST00000321105 BCAMP50895 628 aa12.81□□□□□ -0.36
TOP3A-201ENST00000321105 DNAJC25Q9H1X3 360 aa12.81□□□□□ -0.36
TOP3A-201ENST00000321105 SPATA31A3Q5VYP0 1347 aa12.81□□□□□ -0.36
TOP3A-201ENST00000321105 PTCH1Q13635 1447 aa12.81□□□□□ -0.36
TOP3A-201ENST00000321105 GYG1P46976 350 aa12.81□□□□□ -0.36
TOP3A-201ENST00000321105 CTDSPL2Q05D32 466 aa12.81□□□□□ -0.36
TOP3A-201ENST00000321105 PI4K2BQ8TCG2 481 aa12.81□□□□□ -0.36
TOP3A-201ENST00000321105 LMBRD1Q9NUN5 540 aa12.81□□□□□ -0.36
TOP3A-201ENST00000321105 CCNL1Q9UK58 526 aaPredicted RBP12.81□□□□□ -0.36
TOP3A-201ENST00000321105 LRSAM1Q6UWE0 723 aa12.81□□□□□ -0.36
TOP3A-201ENST00000321105 CEP57L1Q8IYX8 460 aa12.81□□□□□ -0.36
TOP3A-201ENST00000321105 CTCFLQ8NI51 663 aaPredicted RBP12.81□□□□□ -0.36
TOP3A-201ENST00000321105 IL25Q9H293 177 aa12.81□□□□□ -0.36
TOP3A-201ENST00000321105 TRMT1Q9NXH9 659 aaKnown RBP12.81□□□□□ -0.36
TOP3A-201ENST00000321105 PHKA1P46020 1223 aa12.8□□□□□ -0.36
TOP3A-201ENST00000321105 PICALMQ13492 652 aa12.8□□□□□ -0.36
TOP3A-201ENST00000321105 LSG1Q9H089 658 aaKnown RBP12.8□□□□□ -0.36
TOP3A-201ENST00000321105 CCDC87Q9NVE4 849 aa12.8□□□□□ -0.36
TOP3A-201ENST00000321105 UQCRFS1P1P0C7P4 283 aa12.8□□□□□ -0.36
TOP3A-201ENST00000321105 ATP5JP18859 108 aa12.8□□□□□ -0.36
TOP3A-201ENST00000321105 WTAPQ15007 396 aa12.8□□□□□ -0.36
TOP3A-201ENST00000321105 ZNF444Q8N0Y2 327 aaPredicted RBP12.8□□□□□ -0.36
TOP3A-201ENST00000321105 SSRP1Q08945 709 aaKnown RBP12.8□□□□□ -0.36
TOP3A-201ENST00000321105 TPTE2Q6XPS3 522 aa12.8□□□□□ -0.36
TOP3A-201ENST00000321105 CARD10Q9BWT7 1032 aa12.8□□□□□ -0.36
TOP3A-201ENST00000321105 GPHNQ9NQX3 736 aaPredicted RBP12.8□□□□□ -0.36
TOP3A-201ENST00000321105 STAP2Q9UGK3 403 aa12.8□□□□□ -0.36
TOP3A-201ENST00000321105 NRXN1Q9ULB1 1477 aa12.8□□□□□ -0.36
TOP3A-201ENST00000321105 LOC102724428A0A0B4J2F2 783 aa12.79□□□□□ -0.36
TOP3A-201ENST00000321105 PDE8AO60658 829 aa12.79□□□□□ -0.36
TOP3A-201ENST00000321105 ZFYP08048 801 aaPredicted RBP12.79□□□□□ -0.36
TOP3A-201ENST00000321105 SIK1P57059 783 aa12.79□□□□□ -0.36
TOP3A-201ENST00000321105 CFAP100Q494V2 611 aa12.79□□□□□ -0.36
TOP3A-201ENST00000321105 INTS4Q96HW7 963 aaKnown RBP12.79□□□□□ -0.36
TOP3A-201ENST00000321105 ZNF532Q9HCE3 1301 aa12.79□□□□□ -0.36
TOP3A-201ENST00000321105 A0A1B0GVL5 298 aa12.79□□□□□ -0.36
TOP3A-201ENST00000321105 NBPF26B4DH59 902 aa12.79□□□□□ -0.36
TOP3A-201ENST00000321105 ANO6Q4KMQ2 910 aa12.79□□□□□ -0.36
TOP3A-201ENST00000321105 SPECC1Q5M775 1068 aa12.79□□□□□ -0.36
TOP3A-201ENST00000321105 NBPF14Q5TI25 921 aa12.79□□□□□ -0.36
TOP3A-201ENST00000321105 NBPF10Q6P3W6 841 aaKnown RBP12.79□□□□□ -0.36
TOP3A-201ENST00000321105 NBPF15Q8N660 670 aa12.79□□□□□ -0.36
TOP3A-201ENST00000321105 LUZP1Q86V48 1076 aa12.79□□□□□ -0.36
TOP3A-201ENST00000321105 MCM9Q9NXL9 1143 aa12.79□□□□□ -0.36
TOP3A-201ENST00000321105 CD163L1Q9NR16 1453 aa12.79□□□□□ -0.36
TOP3A-201ENST00000321105 TPM3P06753 285 aa12.78□□□□□ -0.36
TOP3A-201ENST00000321105 TSR1Q2NL82 804 aaKnown RBP12.78□□□□□ -0.36
TOP3A-201ENST00000321105 OSBPL3Q9H4L5 887 aa12.78□□□□□ -0.36
TOP3A-201ENST00000321105 COPRSQ9NQ92 184 aa12.78□□□□□ -0.36
TOP3A-201ENST00000321105 A0A087WWV3 80 aa12.78□□□□□ -0.36
TOP3A-201ENST00000321105 CYP21A2P08686 494 aa12.78□□□□□ -0.36
TOP3A-201ENST00000321105 TMX1Q9H3N1 280 aa12.78□□□□□ -0.36
TOP3A-201ENST00000321105 IQGAP1P46940 1657 aa12.78□□□□□ -0.36
TOP3A-201ENST00000321105 CRB1P82279 1406 aa12.78□□□□□ -0.36
TOP3A-201ENST00000321105 NLRP5P59047 1200 aa12.78□□□□□ -0.36
TOP3A-201ENST00000321105 SDR42E1Q8WUS8 393 aa12.78□□□□□ -0.36
TOP3A-201ENST00000321105 KCNQ2O43526 872 aa12.78□□□□□ -0.36
TOP3A-201ENST00000321105 HSPD1P10809 573 aaKnown RBP12.78□□□□□ -0.36
TOP3A-201ENST00000321105 KIF2CQ99661 725 aa12.78□□□□□ -0.36
TOP3A-201ENST00000321105 CATIPQ7Z7H3 387 aa12.77□□□□□ -0.36
TOP3A-201ENST00000321105 CPLX3Q8WVH0 158 aa12.77□□□□□ -0.36
TOP3A-201ENST00000321105 ADCY9O60503 1353 aa12.77□□□□□ -0.36
TOP3A-201ENST00000321105 KIF24Q5T7B8 1368 aa12.77□□□□□ -0.36
TOP3A-201ENST00000321105 E7EWF7 191 aa12.77□□□□□ -0.37
TOP3A-201ENST00000321105 ADD1P35611 737 aaKnown RBP12.77□□□□□ -0.37
TOP3A-201ENST00000321105 CRKLP46109 303 aaKnown RBP12.77□□□□□ -0.37
TOP3A-201ENST00000321105 CTSWP56202 376 aa12.77□□□□□ -0.37
TOP3A-201ENST00000321105 C17orf53Q8N3J3 647 aaPredicted RBP12.77□□□□□ -0.37
TOP3A-201ENST00000321105 CNNM3Q8NE01 707 aa12.77□□□□□ -0.37
TOP3A-201ENST00000321105 SMARCC1Q92922 1105 aaPredicted RBP12.77□□□□□ -0.37
TOP3A-201ENST00000321105 UIMC1Q96RL1 719 aa12.77□□□□□ -0.37
TOP3A-201ENST00000321105 AATFQ9NY61 560 aaKnown RBP eCLIP12.77□□□□□ -0.37
TOP3A-201ENST00000321105 OVOS2A0A0J9YW53 1432 aa12.77□□□□□ -0.37
TOP3A-201ENST00000321105 FGAP02671 866 aa12.77□□□□□ -0.37
TOP3A-201ENST00000321105 TPM1P09493 284 aa12.77□□□□□ -0.37
TOP3A-201ENST00000321105 POLA2Q14181 598 aa12.77□□□□□ -0.37
TOP3A-201ENST00000321105 SOGA3Q5TF21 947 aa12.77□□□□□ -0.37
TOP3A-201ENST00000321105 CCDC102BQ68D86 513 aa12.77□□□□□ -0.37
TOP3A-201ENST00000321105 OVOS2Q6IE36 1432 aa12.77□□□□□ -0.37
TOP3A-201ENST00000321105 APPBP2Q92624 585 aa12.77□□□□□ -0.37
TOP3A-201ENST00000321105 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.77□□□□□ -0.372e-7■■□□□ 13.3
TOP3A-201ENST00000321105 SAP30BPQ9UHR5 308 aaKnown RBP12.77□□□□□ -0.37
TOP3A-201ENST00000321105 USP31Q70CQ4 1352 aa12.76□□□□□ -0.37
TOP3A-201ENST00000321105 MAGEB6P1A0A0J9YX57 407 aa12.76□□□□□ -0.37
TOP3A-201ENST00000321105 BRD1O95696 1058 aa12.76□□□□□ -0.37
TOP3A-201ENST00000321105 AFMP43652 599 aa12.76□□□□□ -0.37
TOP3A-201ENST00000321105 PUM3Q15397 648 aaKnown RBP12.76□□□□□ -0.37
TOP3A-201ENST00000321105 ZBTB38Q8NAP3 1195 aaPredicted RBP12.76□□□□□ -0.37
TOP3A-201ENST00000321105 GPT2Q8TD30 523 aa12.76□□□□□ -0.37
TOP3A-201ENST00000321105 C16orf45Q96MC5 204 aaPredicted RBP12.76□□□□□ -0.37
TOP3A-201ENST00000321105 RRAGDQ9NQL2 400 aaPredicted RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms