RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 STK31Q9BXU1 1019 aa18.99■□□□□ 0.63
CCDC88B-201ENST00000301897 PKN2Q16513 984 aaKnown RBP18.98■□□□□ 0.63
CCDC88B-201ENST00000301897 TTLL11Q8NHH1 800 aa18.98■□□□□ 0.63
CCDC88B-201ENST00000301897 JARID2Q92833 1246 aaPredicted RBP18.98■□□□□ 0.63
CCDC88B-201ENST00000301897 COA1Q9GZY4 146 aa18.98■□□□□ 0.63
CCDC88B-201ENST00000301897 MINPP1Q9UNW1 487 aa18.98■□□□□ 0.63
CCDC88B-201ENST00000301897 PI4KAP2A4QPH2 592 aa18.97■□□□□ 0.63
CCDC88B-201ENST00000301897 CCT4P50991 539 aaKnown RBP18.97■□□□□ 0.63
CCDC88B-201ENST00000301897 STRIP1Q5VSL9 837 aa18.97■□□□□ 0.63
CCDC88B-201ENST00000301897 PI4KAP1Q8N8J0 262 aa18.97■□□□□ 0.63
CCDC88B-201ENST00000301897 LEMD3Q9Y2U8 911 aa18.97■□□□□ 0.63
CCDC88B-201ENST00000301897 IGKV5-2P06315 115 aa18.96■□□□□ 0.63
CCDC88B-201ENST00000301897 IGHMBP2P38935 993 aaKnown RBP18.96■□□□□ 0.63
CCDC88B-201ENST00000301897 DACT2Q5SW24 774 aa18.96■□□□□ 0.63
CCDC88B-201ENST00000301897 TTLL12Q14166 644 aaPredicted RBP18.95■□□□□ 0.62
CCDC88B-201ENST00000301897 NOM1Q5C9Z4 860 aaKnown RBP18.95■□□□□ 0.62
CCDC88B-201ENST00000301897 GREM2Q9H772 168 aa18.95■□□□□ 0.62
CCDC88B-201ENST00000301897 SPEF2Q9C093 1822 aa18.95■□□□□ 0.62
CCDC88B-201ENST00000301897 NBPF9Q3BBW0 867 aa18.94■□□□□ 0.62
CCDC88B-201ENST00000301897 ANKRD2Q9GZV1 360 aa18.94■□□□□ 0.62
CCDC88B-201ENST00000301897 HDAC9Q9UKV0 1011 aa18.94■□□□□ 0.62
CCDC88B-201ENST00000301897 NEURL1BA8MQ27 555 aa18.93■□□□□ 0.62
CCDC88B-201ENST00000301897 UBE2Q2LH0YL09 131 aa18.93■□□□□ 0.62
CCDC88B-201ENST00000301897 WNT10BO00744 389 aa18.93■□□□□ 0.62
CCDC88B-201ENST00000301897 TM4SF4P48230 202 aa18.93■□□□□ 0.62
CCDC88B-201ENST00000301897 SREBF2Q12772 1141 aa18.93■□□□□ 0.62
CCDC88B-201ENST00000301897 APOBEC3FQ8IUX4 373 aaKnown RBP18.93■□□□□ 0.62
CCDC88B-201ENST00000301897 FBXW7Q969H0 707 aa18.93■□□□□ 0.62
CCDC88B-201ENST00000301897 PCDH10Q9P2E7 1040 aa18.93■□□□□ 0.62
CCDC88B-201ENST00000301897 H7C1W4 665 aa18.92■□□□□ 0.62
CCDC88B-201ENST00000301897 SOX10P56693 466 aa18.92■□□□□ 0.62
CCDC88B-201ENST00000301897 TTLL5Q6EMB2 1281 aa18.92■□□□□ 0.62
CCDC88B-201ENST00000301897 ARMC9Q7Z3E5 817 aa18.92■□□□□ 0.62
CCDC88B-201ENST00000301897 UBE3BQ7Z3V4 1068 aa18.92■□□□□ 0.62
CCDC88B-201ENST00000301897 TSPYL6Q8N831 410 aa18.92■□□□□ 0.62
CCDC88B-201ENST00000301897 PLA2G12BQ9BX93 195 aa18.92■□□□□ 0.62
CCDC88B-201ENST00000301897 ZNF646O15015 1829 aaPredicted RBP18.91■□□□□ 0.62
CCDC88B-201ENST00000301897 CWF19L2Q2TBE0 894 aaKnown RBP18.91■□□□□ 0.62
CCDC88B-201ENST00000301897 MOB2Q70IA6 237 aa18.91■□□□□ 0.62
CCDC88B-201ENST00000301897 MPHOSPH8Q99549 860 aa18.91■□□□□ 0.62
CCDC88B-201ENST00000301897 MYH16Q9H6N6 1097 aa18.91■□□□□ 0.62
CCDC88B-201ENST00000301897 CACNA1FO60840 1977 aa18.91■□□□□ 0.62
CCDC88B-201ENST00000301897 ZNF804BA4D1E1 1349 aa18.91■□□□□ 0.62
CCDC88B-201ENST00000301897 WTIPA6NIX2 430 aaPredicted RBP18.9■□□□□ 0.62
CCDC88B-201ENST00000301897 CCDC27Q2M243 656 aa18.9■□□□□ 0.62
CCDC88B-201ENST00000301897 ZNF296Q8WUU4 475 aaPredicted RBP18.9■□□□□ 0.62
CCDC88B-201ENST00000301897 HPS5Q9UPZ3 1129 aa18.9■□□□□ 0.62
CCDC88B-201ENST00000301897 COL1A1P02452 1464 aaPredicted RBP18.9■□□□□ 0.62
CCDC88B-201ENST00000301897 ITGA6P23229 1130 aa18.89■□□□□ 0.61
CCDC88B-201ENST00000301897 KCNJ4P48050 445 aa18.89■□□□□ 0.61
CCDC88B-201ENST00000301897 TWISTNBQ3B726 338 aaPredicted RBP18.89■□□□□ 0.61
CCDC88B-201ENST00000301897 PRAMEF18Q5VWM3 479 aa18.89■□□□□ 0.61
CCDC88B-201ENST00000301897 MXD3Q9BW11 206 aa18.89■□□□□ 0.61
CCDC88B-201ENST00000301897 CFHR5Q9BXR6 569 aa18.89■□□□□ 0.61
CCDC88B-201ENST00000301897 TBC1D8O95759 1140 aa18.88■□□□□ 0.61
CCDC88B-201ENST00000301897 ALDH1A1P00352 501 aa18.88■□□□□ 0.61
CCDC88B-201ENST00000301897 SLC4A2P04920 1241 aa18.88■□□□□ 0.61
CCDC88B-201ENST00000301897 GCKRQ14397 625 aa18.88■□□□□ 0.61
CCDC88B-201ENST00000301897 TSR2Q969E8 191 aaKnown RBP18.88■□□□□ 0.61
CCDC88B-201ENST00000301897 SCAF8Q9UPN6 1271 aaKnown RBP18.88■□□□□ 0.61
CCDC88B-201ENST00000301897 GPR25O00155 361 aa18.87■□□□□ 0.61
CCDC88B-201ENST00000301897 SASH1O94885 1247 aa18.87■□□□□ 0.61
CCDC88B-201ENST00000301897 CSF1RP07333 972 aa18.87■□□□□ 0.61
CCDC88B-201ENST00000301897 IL16Q14005 1332 aa18.87■□□□□ 0.61
CCDC88B-201ENST00000301897 TXNRD3Q86VQ6 643 aa18.87■□□□□ 0.61
CCDC88B-201ENST00000301897 KIAA0825Q8IV33 1275 aa18.87■□□□□ 0.61
CCDC88B-201ENST00000301897 INHBEP58166 350 aa18.86■□□□□ 0.61
CCDC88B-201ENST00000301897 GTF2IP78347 998 aa18.86■□□□□ 0.61
CCDC88B-201ENST00000301897 PTPN12Q05209 780 aaKnown RBP18.86■□□□□ 0.61
CCDC88B-201ENST00000301897 FLIIQ13045 1269 aa18.86■□□□□ 0.61
CCDC88B-201ENST00000301897 NCBP3Q53F19 620 aaKnown RBP18.86■□□□□ 0.61
CCDC88B-201ENST00000301897 PRPF38BQ5VTL8 546 aaKnown RBP18.86■□□□□ 0.61
CCDC88B-201ENST00000301897 FBXO46Q6PJ61 603 aaPredicted RBP18.86■□□□□ 0.61
CCDC88B-201ENST00000301897 LINS1Q8NG48 757 aa18.86■□□□□ 0.61
CCDC88B-201ENST00000301897 ZBED3Q96IU2 234 aaPredicted RBP18.86■□□□□ 0.61
CCDC88B-201ENST00000301897 PPP2R3BQ9Y5P8 575 aa18.86■□□□□ 0.61
CCDC88B-201ENST00000301897 ANKRD18BA2A2Z9 1011 aa18.85■□□□□ 0.61
CCDC88B-201ENST00000301897 UNCXA6NJT0 531 aa18.85■□□□□ 0.61
CCDC88B-201ENST00000301897 FKTNO75072 461 aa18.85■□□□□ 0.61
CCDC88B-201ENST00000301897 DLGAP5Q15398 846 aa18.85■□□□□ 0.61
CCDC88B-201ENST00000301897 LDLRAD1Q5T700 205 aa18.85■□□□□ 0.61
CCDC88B-201ENST00000301897 C15orf52Q6ZUT6 534 aaKnown RBP18.85■□□□□ 0.61
CCDC88B-201ENST00000301897 WWC1Q8IX03 1113 aa18.85■□□□□ 0.61
CCDC88B-201ENST00000301897 MTMR14Q8NCE2 650 aa18.85■□□□□ 0.61
CCDC88B-201ENST00000301897 DNAAF4Q8WXU2 420 aa18.85■□□□□ 0.61
CCDC88B-201ENST00000301897 CHRNDQ07001 517 aa18.84■□□□□ 0.61
CCDC88B-201ENST00000301897 FKBP5Q13451 457 aaPredicted RBP18.84■□□□□ 0.61
CCDC88B-201ENST00000301897 SPRYD7Q5W111 196 aa18.84■□□□□ 0.61
CCDC88B-201ENST00000301897 G2E3Q7L622 706 aa18.84■□□□□ 0.61
CCDC88B-201ENST00000301897 CD209Q9NNX6 404 aa18.84■□□□□ 0.61
CCDC88B-201ENST00000301897 ANGEL1Q9UNK9 670 aaKnown RBP18.84■□□□□ 0.61
CCDC88B-201ENST00000301897 MANSC4A6NHS7 340 aaPredicted RBP18.83■□□□□ 0.6
CCDC88B-201ENST00000301897 MYO1BO43795 1136 aa18.83■□□□□ 0.6
CCDC88B-201ENST00000301897 PPP1R12BO60237 982 aaPredicted RBP18.83■□□□□ 0.6
CCDC88B-201ENST00000301897 CASP7P55210 303 aa18.83■□□□□ 0.6
CCDC88B-201ENST00000301897 MKRN3Q13064 507 aaKnown RBP18.83■□□□□ 0.6
CCDC88B-201ENST00000301897 ZNF804AQ7Z570 1209 aa18.83■□□□□ 0.6
CCDC88B-201ENST00000301897 SLC10A4Q96EP9 437 aa18.83■□□□□ 0.6
CCDC88B-201ENST00000301897 DEFB129Q9H1M3 183 aa18.83■□□□□ 0.6
CCDC88B-201ENST00000301897 ECM29Q5VYK3 1845 aa18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms