RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 BRF1Q92994 677 aa28.4■■■□□ 2.14
TRIM54-201ENST00000296098 RREB1Q92766 1687 aa28.4■■■□□ 2.14
TRIM54-201ENST00000296098 ZNF34Q8IZ26 560 aa28.4■■■□□ 2.14
TRIM54-201ENST00000296098 CICQ96RK0 1608 aaPredicted RBP28.39■■■□□ 2.14
TRIM54-201ENST00000296098 ZAP70P43403 619 aa28.39■■■□□ 2.14
TRIM54-201ENST00000296098 SLIT2O94813 1529 aa28.38■■■□□ 2.13
TRIM54-201ENST00000296098 LRRC2Q9BYS8 371 aa28.38■■■□□ 2.13
TRIM54-201ENST00000296098 E7EWF7 191 aa28.38■■■□□ 2.13
TRIM54-201ENST00000296098 WASHC4Q2M389 1173 aa28.38■■■□□ 2.13
TRIM54-201ENST00000296098 VGLL2Q8N8G2 317 aa28.38■■■□□ 2.13
TRIM54-201ENST00000296098 EIF5P55010 431 aaKnown RBP28.37■■■□□ 2.13
TRIM54-201ENST00000296098 CCDC87Q9NVE4 849 aa28.37■■■□□ 2.13
TRIM54-201ENST00000296098 AKAP11Q9UKA4 1901 aa28.37■■■□□ 2.13
TRIM54-201ENST00000296098 A0A0G2JS52 829 aa28.36■■■□□ 2.13
TRIM54-201ENST00000296098 KRT85P78386 507 aa28.36■■■□□ 2.13
TRIM54-201ENST00000296098 FERMT3Q86UX7 667 aa28.36■■■□□ 2.13
TRIM54-201ENST00000296098 ARAP2Q8WZ64 1704 aa28.36■■■□□ 2.13
TRIM54-201ENST00000296098 APPBP2Q92624 585 aa28.36■■■□□ 2.13
TRIM54-201ENST00000296098 NWD2Q9ULI1 1742 aa28.36■■■□□ 2.13
TRIM54-201ENST00000296098 ESPNB1AK53 854 aa28.36■■■□□ 2.13
TRIM54-201ENST00000296098 EXOSC10Q01780 885 aaKnown RBP28.36■■■□□ 2.13
TRIM54-201ENST00000296098 A0A0G2JLW4 131 aa28.35■■■□□ 2.13
TRIM54-201ENST00000296098 JAK2O60674 1132 aa28.35■■■□□ 2.13
TRIM54-201ENST00000296098 INTS5Q6P9B9 1019 aaKnown RBP28.35■■■□□ 2.13
TRIM54-201ENST00000296098 PI16Q6UXB8 463 aa28.35■■■□□ 2.13
TRIM54-201ENST00000296098 ZNF512BQ96KM6 892 aaPredicted RBP28.35■■■□□ 2.13
TRIM54-201ENST00000296098 AK7Q96M32 723 aa28.35■■■□□ 2.13
TRIM54-201ENST00000296098 AGXT2Q9BYV1 514 aa28.35■■■□□ 2.13
TRIM54-201ENST00000296098 PFKFB2O60825 505 aa28.35■■■□□ 2.13
TRIM54-201ENST00000296098 LETM1O95202 739 aaPredicted RBP28.35■■■□□ 2.13
TRIM54-201ENST00000296098 MCAMP43121 646 aa28.35■■■□□ 2.13
TRIM54-201ENST00000296098 ACSBG1Q96GR2 724 aa28.35■■■□□ 2.13
TRIM54-201ENST00000296098 CTNNA3Q9UI47 895 aa28.35■■■□□ 2.13
TRIM54-201ENST00000296098 CRKLP46109 303 aaKnown RBP28.34■■■□□ 2.13
TRIM54-201ENST00000296098 SCRN1Q12765 414 aa28.34■■■□□ 2.13
TRIM54-201ENST00000296098 ATP6V1AP38606 617 aa28.33■■■□□ 2.13
TRIM54-201ENST00000296098 TPRNQ4KMQ1 711 aa28.33■■■□□ 2.13
TRIM54-201ENST00000296098 LLPHQ9BRT6 129 aaKnown RBP28.33■■■□□ 2.13
TRIM54-201ENST00000296098 DDX24Q9GZR7 859 aaKnown RBP eCLIP28.33■■■□□ 2.13
TRIM54-201ENST00000296098 SPATA31A5Q5VU36 1347 aa28.33■■■□□ 2.13
TRIM54-201ENST00000296098 SPATA31A7Q8IWB4 1347 aa28.33■■■□□ 2.13
TRIM54-201ENST00000296098 PDE8BO95263 885 aa28.33■■■□□ 2.13
TRIM54-201ENST00000296098 TTLL5Q6EMB2 1281 aa28.33■■■□□ 2.13
TRIM54-201ENST00000296098 MARCH10Q8NA82 808 aaPredicted RBP28.33■■■□□ 2.13
TRIM54-201ENST00000296098 FOXP2O15409 715 aa28.32■■■□□ 2.12
TRIM54-201ENST00000296098 CLCN1P35523 988 aa28.32■■■□□ 2.12
TRIM54-201ENST00000296098 PDLIM2Q96JY6 352 aa28.32■■■□□ 2.12
TRIM54-201ENST00000296098 ELP1O95163 1332 aa28.32■■■□□ 2.12
TRIM54-201ENST00000296098 APOBRQ0VD83 1088 aa28.31■■■□□ 2.12
TRIM54-201ENST00000296098 RNF214Q8ND24 703 aa28.31■■■□□ 2.12
TRIM54-201ENST00000296098 ATRNO75882 1429 aa28.31■■■□□ 2.12
TRIM54-201ENST00000296098 LOC102724428A0A0B4J2F2 783 aa28.31■■■□□ 2.12
TRIM54-201ENST00000296098 SIK1P57059 783 aa28.31■■■□□ 2.12
TRIM54-201ENST00000296098 IMMTQ16891 758 aaKnown RBP28.31■■■□□ 2.12
TRIM54-201ENST00000296098 SMARCC2Q8TAQ2 1214 aa28.31■■■□□ 2.12
TRIM54-201ENST00000296098 LAMB2P55268 1798 aa28.3■■■□□ 2.12
TRIM54-201ENST00000296098 TTF1Q15361 905 aaPredicted RBP28.3■■■□□ 2.12
TRIM54-201ENST00000296098 ZSCAN25Q6NSZ9 544 aa28.3■■■□□ 2.12
TRIM54-201ENST00000296098 PUS7LQ9H0K6 701 aaKnown RBP28.3■■■□□ 2.12
TRIM54-201ENST00000296098 MROH5Q6ZUA9 1318 aa28.3■■■□□ 2.12
TRIM54-201ENST00000296098 SUSD4Q5VX71 490 aa28.3■■■□□ 2.12
TRIM54-201ENST00000296098 TTC6Q86TZ1 520 aa28.3■■■□□ 2.12
TRIM54-201ENST00000296098 DDX60Q8IY21 1712 aaKnown RBP28.3■■■□□ 2.12
TRIM54-201ENST00000296098 PUM3Q15397 648 aaKnown RBP28.29■■■□□ 2.12
TRIM54-201ENST00000296098 FAM173BQ6P4H8 233 aa28.29■■■□□ 2.12
TRIM54-201ENST00000296098 FAM184AQ8NB25 1140 aa28.29■■■□□ 2.12
TRIM54-201ENST00000296098 KLHL34Q8N239 644 aa28.28■■■□□ 2.12
TRIM54-201ENST00000296098 NSUN7Q8NE18 718 aaKnown RBP28.28■■■□□ 2.12
TRIM54-201ENST00000296098 DDX11Q96FC9 970 aa28.28■■■□□ 2.12
TRIM54-201ENST00000296098 SCAND2PQ9GZW5 306 aaPredicted RBP28.28■■■□□ 2.12
TRIM54-201ENST00000296098 NUTM2BA6NNL0 878 aaPredicted RBP28.28■■■□□ 2.12
TRIM54-201ENST00000296098 NUTM2EB1AL46 878 aaPredicted RBP28.28■■■□□ 2.12
TRIM54-201ENST00000296098 GPAA1O43292 621 aa28.28■■■□□ 2.12
TRIM54-201ENST00000296098 CAMTA2O94983 1202 aa28.28■■■□□ 2.12
TRIM54-201ENST00000296098 ARID4AP29374 1257 aaPredicted RBP28.28■■■□□ 2.12
TRIM54-201ENST00000296098 BARGINQ6ZT62 677 aa28.28■■■□□ 2.12
TRIM54-201ENST00000296098 NUTM2AQ8IVF1 878 aaPredicted RBP28.28■■■□□ 2.12
TRIM54-201ENST00000296098 UTP14AQ9BVJ6 771 aaKnown RBP28.28■■■□□ 2.12
TRIM54-201ENST00000296098 H3BQV1 296 aa28.27■■■□□ 2.12
TRIM54-201ENST00000296098 UQCRFS1P1P0C7P4 283 aa28.27■■■□□ 2.12
TRIM54-201ENST00000296098 ADD2P35612 726 aa28.27■■■□□ 2.12
TRIM54-201ENST00000296098 HMGN5P82970 282 aaKnown RBP28.27■■■□□ 2.12
TRIM54-201ENST00000296098 ITPK1Q13572 414 aa28.27■■■□□ 2.12
TRIM54-201ENST00000296098 IFFO2Q5TF58 517 aa28.27■■■□□ 2.12
TRIM54-201ENST00000296098 CCDC102BQ68D86 513 aa28.27■■■□□ 2.12
TRIM54-201ENST00000296098 LPIN2Q92539 896 aa28.27■■■□□ 2.12
TRIM54-201ENST00000296098 MYH14Q7Z406 1995 aaKnown RBP28.27■■■□□ 2.12
TRIM54-201ENST00000296098 FGAP02671 866 aa28.26■■■□□ 2.12
TRIM54-201ENST00000296098 HCLS1P14317 486 aaPredicted RBP28.26■■■□□ 2.12
TRIM54-201ENST00000296098 PARP10Q53GL7 1025 aa28.26■■■□□ 2.12
TRIM54-201ENST00000296098 FBXL16Q8N461 479 aa28.26■■■□□ 2.12
TRIM54-201ENST00000296098 COL5A3P25940 1745 aaPredicted RBP28.26■■■□□ 2.11
TRIM54-201ENST00000296098 PHKA1P46020 1223 aa28.26■■■□□ 2.11
TRIM54-201ENST00000296098 HAND2P61296 217 aa28.26■■■□□ 2.11
TRIM54-201ENST00000296098 RESTQ13127 1097 aa28.26■■■□□ 2.11
TRIM54-201ENST00000296098 ZNF274Q96GC6 653 aaPredicted RBP28.26■■■□□ 2.11
TRIM54-201ENST00000296098 KIF3AQ9Y496 699 aa28.26■■■□□ 2.11
TRIM54-201ENST00000296098 PTPDC1A2A3K4 754 aa28.25■■■□□ 2.11
TRIM54-201ENST00000296098 FGFR2P21802 821 aa28.25■■■□□ 2.11
TRIM54-201ENST00000296098 CHST3Q7LGC8 479 aa28.25■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms