RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 CLEC17AQ6ZS10 378 aa13.64□□□□□ -0.23
CUX1-202ENST00000292538 RNF214Q8ND24 703 aa13.64□□□□□ -0.23
CUX1-202ENST00000292538 FSD2A1L4K1 749 aa13.63□□□□□ -0.23
CUX1-202ENST00000292538 WTIPA6NIX2 430 aaPredicted RBP13.63□□□□□ -0.23
CUX1-202ENST00000292538 CAMTA2O94983 1202 aa13.63□□□□□ -0.23
CUX1-202ENST00000292538 KRT32Q14532 448 aa13.63□□□□□ -0.23
CUX1-202ENST00000292538 LINC00116Q8NCU8 138 aa13.63□□□□□ -0.23
CUX1-202ENST00000292538 PLA2G12BQ9BX93 195 aa13.63□□□□□ -0.23
CUX1-202ENST00000292538 HELLSQ9NRZ9 838 aa13.63□□□□□ -0.23
CUX1-202ENST00000292538 ANKRD1Q15327 319 aa13.63□□□□□ -0.23
CUX1-202ENST00000292538 NCOA5Q9HCD5 579 aaKnown RBP13.63□□□□□ -0.23
CUX1-202ENST00000292538 GPHNQ9NQX3 736 aaPredicted RBP13.63□□□□□ -0.23
CUX1-202ENST00000292538 TMEM63CQ9P1W3 806 aa13.63□□□□□ -0.23
CUX1-202ENST00000292538 SRP68Q9UHB9 627 aaKnown RBP13.63□□□□□ -0.23
CUX1-202ENST00000292538 RPAP1Q9BWH6 1393 aaPredicted RBP13.63□□□□□ -0.23
CUX1-202ENST00000292538 IGHMBP2P38935 993 aaKnown RBP13.63□□□□□ -0.23
CUX1-202ENST00000292538 BCAMP50895 628 aa13.63□□□□□ -0.23
CUX1-202ENST00000292538 F13A1P00488 732 aa13.62□□□□□ -0.23
CUX1-202ENST00000292538 KCNB2Q92953 911 aa13.62□□□□□ -0.23
CUX1-202ENST00000292538 IL17RAQ96F46 866 aa13.62□□□□□ -0.23
CUX1-202ENST00000292538 CDHR2Q9BYE9 1310 aa13.62□□□□□ -0.23
CUX1-202ENST00000292538 E7EWF7 191 aa13.62□□□□□ -0.23
CUX1-202ENST00000292538 CEBPZQ03701 1054 aaKnown RBP13.62□□□□□ -0.23
CUX1-202ENST00000292538 ERFEQ4G0M1 354 aa13.62□□□□□ -0.23
CUX1-202ENST00000292538 CCDC152Q4G0S7 254 aa13.62□□□□□ -0.23
CUX1-202ENST00000292538 CDC37L1Q7L3B6 337 aa13.62□□□□□ -0.23
CUX1-202ENST00000292538 PIH1D3Q9NQM4 214 aaKnown RBP13.62□□□□□ -0.23
CUX1-202ENST00000292538 TFIP11Q9UBB9 837 aaKnown RBP13.62□□□□□ -0.23
CUX1-202ENST00000292538 GNPATO15228 680 aa13.61□□□□□ -0.23
CUX1-202ENST00000292538 GPAA1O43292 621 aa13.61□□□□□ -0.23
CUX1-202ENST00000292538 FGAP02671 866 aa13.61□□□□□ -0.23
CUX1-202ENST00000292538 SHANK3Q9BYB0 1731 aa13.61□□□□□ -0.23
CUX1-202ENST00000292538 GUCY1B3Q02153 619 aa13.61□□□□□ -0.23
CUX1-202ENST00000292538 USPL1Q5W0Q7 1092 aa13.61□□□□□ -0.23
CUX1-202ENST00000292538 FAM184AQ8NB25 1140 aa13.61□□□□□ -0.23
CUX1-202ENST00000292538 SMARCC1Q92922 1105 aaPredicted RBP13.61□□□□□ -0.23
CUX1-202ENST00000292538 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.61□□□□□ -0.237e-7■■■□□ 15.6
CUX1-202ENST00000292538 ABCF2Q9UG63 623 aa13.61□□□□□ -0.23
CUX1-202ENST00000292538 MTMR6Q9Y217 621 aa13.61□□□□□ -0.23
CUX1-202ENST00000292538 TUBGCP6Q96RT7 1819 aa13.61□□□□□ -0.23
CUX1-202ENST00000292538 COL14A1Q05707 1796 aaKnown RBP13.6□□□□□ -0.23
CUX1-202ENST00000292538 H3BQV1 296 aa13.6□□□□□ -0.23
CUX1-202ENST00000292538 PUM3Q15397 648 aaKnown RBP13.6□□□□□ -0.23
CUX1-202ENST00000292538 LRRFIP1Q32MZ4 808 aaKnown RBP13.6□□□□□ -0.23
CUX1-202ENST00000292538 IFFO2Q5TF58 517 aa13.6□□□□□ -0.23
CUX1-202ENST00000292538 BARGINQ6ZT62 677 aa13.6□□□□□ -0.23
CUX1-202ENST00000292538 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.6□□□□□ -0.23
CUX1-202ENST00000292538 NASPP49321 788 aaPredicted RBP13.6□□□□□ -0.23
CUX1-202ENST00000292538 C3orf67Q6ZVT6 689 aa13.6□□□□□ -0.23
CUX1-202ENST00000292538 DHX32Q7L7V1 743 aaKnown RBP13.6□□□□□ -0.23
CUX1-202ENST00000292538 TOMM22Q9NS69 142 aa13.6□□□□□ -0.23
CUX1-202ENST00000292538 WWC3Q9ULE0 1092 aa13.6□□□□□ -0.23
CUX1-202ENST00000292538 ZNF652Q9Y2D9 606 aa13.6□□□□□ -0.23
CUX1-202ENST00000292538 SLC5A1P13866 664 aa13.6□□□□□ -0.23
CUX1-202ENST00000292538 IMMTQ16891 758 aaKnown RBP13.6□□□□□ -0.23
CUX1-202ENST00000292538 DSCC1Q9BVC3 393 aa13.6□□□□□ -0.23
CUX1-202ENST00000292538 DENND2AQ9ULE3 1009 aa13.6□□□□□ -0.23
CUX1-202ENST00000292538 LAMB4A4D0S4 1761 aa13.6□□□□□ -0.23
CUX1-202ENST00000292538 ZNF532Q9HCE3 1301 aa13.59□□□□□ -0.23
CUX1-202ENST00000292538 MAGEB6Q8N7X4 407 aa13.59□□□□□ -0.23
CUX1-202ENST00000292538 LPIN2Q92539 896 aa13.59□□□□□ -0.23
CUX1-202ENST00000292538 INCENPQ9NQS7 918 aa13.59□□□□□ -0.23
CUX1-202ENST00000292538 ZNF213O14771 459 aa13.59□□□□□ -0.23
CUX1-202ENST00000292538 SCRN1Q12765 414 aa13.59□□□□□ -0.23
CUX1-202ENST00000292538 TBC1D9BQ66K14 1250 aa13.59□□□□□ -0.23
CUX1-202ENST00000292538 VPS37DQ86XT2 251 aa13.59□□□□□ -0.23
CUX1-202ENST00000292538 MIGA1Q8NAN2 632 aa13.59□□□□□ -0.23
CUX1-202ENST00000292538 APPBP2Q92624 585 aa13.59□□□□□ -0.23
CUX1-202ENST00000292538 ANP32BQ92688 251 aaKnown RBP13.59□□□□□ -0.23
CUX1-202ENST00000292538 AIDAQ96BJ3 306 aa13.59□□□□□ -0.23
CUX1-202ENST00000292538 CCNL1Q9UK58 526 aaPredicted RBP13.59□□□□□ -0.23
CUX1-202ENST00000292538 FBXO3Q9UK99 471 aa13.59□□□□□ -0.23
CUX1-202ENST00000292538 JAG2Q9Y219 1238 aa13.59□□□□□ -0.23
CUX1-202ENST00000292538 COL16A1Q07092 1604 aaPredicted RBP13.58□□□□□ -0.23
CUX1-202ENST00000292538 UBR2Q8IWV8 1755 aa13.58□□□□□ -0.24
CUX1-202ENST00000292538 ZPR1O75312 459 aa13.58□□□□□ -0.24
CUX1-202ENST00000292538 CHRNDQ07001 517 aa13.58□□□□□ -0.24
CUX1-202ENST00000292538 RASGRF1Q13972 1273 aa13.58□□□□□ -0.24
CUX1-202ENST00000292538 RALYLQ86SE5 291 aaKnown RBP13.58□□□□□ -0.24
CUX1-202ENST00000292538 LRP2BPQ9P2M1 347 aa13.58□□□□□ -0.24
CUX1-202ENST00000292538 ATP6V1DQ9Y5K8 247 aa13.58□□□□□ -0.24
CUX1-202ENST00000292538 NTSR2O95665 410 aa13.58□□□□□ -0.24
CUX1-202ENST00000292538 GYG1P46976 350 aa13.58□□□□□ -0.24
CUX1-202ENST00000292538 PARP10Q53GL7 1025 aa13.58□□□□□ -0.24
CUX1-202ENST00000292538 VGLL2Q8N8G2 317 aa13.58□□□□□ -0.24
CUX1-202ENST00000292538 SPATA5Q8NB90 893 aa13.58□□□□□ -0.24
CUX1-202ENST00000292538 RXRAP19793 462 aa13.57□□□□□ -0.24
CUX1-202ENST00000292538 PHLPP1O60346 1717 aa13.57□□□□□ -0.24
CUX1-202ENST00000292538 ZFYP08048 801 aaPredicted RBP13.57□□□□□ -0.24
CUX1-202ENST00000292538 VPS72Q15906 364 aa13.57□□□□□ -0.24
CUX1-202ENST00000292538 NBPF5PQ86XG9 351 aaPredicted RBP13.57□□□□□ -0.24
CUX1-202ENST00000292538 TRIM44Q96DX7 344 aaPredicted RBP13.57□□□□□ -0.24
CUX1-202ENST00000292538 RBSNQ9H1K0 784 aa13.57□□□□□ -0.24
CUX1-202ENST00000292538 RIC1Q4ADV7 1423 aa13.57□□□□□ -0.24
CUX1-202ENST00000292538 MBD3O95983 291 aa13.57□□□□□ -0.24
CUX1-202ENST00000292538 TSGA10IPQ3SY00 556 aa13.57□□□□□ -0.24
CUX1-202ENST00000292538 RRP12Q5JTH9 1297 aaKnown RBP13.57□□□□□ -0.24
CUX1-202ENST00000292538 CCDC144CPQ8IYA2 1237 aa13.57□□□□□ -0.24
CUX1-202ENST00000292538 GTF3C6Q969F1 213 aa13.57□□□□□ -0.24
CUX1-202ENST00000292538 SETDB2Q96T68 719 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms