RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 ATP2B3Q16720 1220 aa23.74■■□□□ 1.39
VPS53-201ENST00000291074 LDHAL6AQ6ZMR3 332 aa23.74■■□□□ 1.39
VPS53-201ENST00000291074 NAP1L5Q96NT1 182 aaPredicted RBP23.74■■□□□ 1.39
VPS53-201ENST00000291074 RIPOR2Q9Y4F9 1068 aa23.74■■□□□ 1.39
VPS53-201ENST00000291074 EXOC5O00471 708 aa23.73■■□□□ 1.39
VPS53-201ENST00000291074 PPFIA3O75145 1194 aa23.73■■□□□ 1.39
VPS53-201ENST00000291074 MSNP26038 577 aaKnown RBP23.73■■□□□ 1.39
VPS53-201ENST00000291074 CTSWP56202 376 aa23.73■■□□□ 1.39
VPS53-201ENST00000291074 EIF2AK3Q9NZJ5 1116 aaKnown RBP23.73■■□□□ 1.39
VPS53-201ENST00000291074 ROBO1Q9Y6N7 1651 aa23.73■■□□□ 1.39
VPS53-201ENST00000291074 DOT1LQ8TEK3 1739 aa23.73■■□□□ 1.39
VPS53-201ENST00000291074 IRS4O14654 1257 aaPredicted RBP23.73■■□□□ 1.39
VPS53-201ENST00000291074 PDIA4P13667 645 aaKnown RBP23.73■■□□□ 1.39
VPS53-201ENST00000291074 CCT2P78371 535 aaKnown RBP23.73■■□□□ 1.39
VPS53-201ENST00000291074 TRMT112Q9UI30 125 aaKnown RBP23.73■■□□□ 1.39
VPS53-201ENST00000291074 PLCH1Q4KWH8 1693 aa23.72■■□□□ 1.39
VPS53-201ENST00000291074 PFKFB2O60825 505 aa23.72■■□□□ 1.39
VPS53-201ENST00000291074 LETM1O95202 739 aaPredicted RBP23.72■■□□□ 1.39
VPS53-201ENST00000291074 LIG1P18858 919 aa23.72■■□□□ 1.39
VPS53-201ENST00000291074 HAND2P61296 217 aa23.72■■□□□ 1.39
VPS53-201ENST00000291074 NAP1L2Q9ULW6 460 aaPredicted RBP23.72■■□□□ 1.39
VPS53-201ENST00000291074 AKAP11Q9UKA4 1901 aa23.72■■□□□ 1.39
VPS53-201ENST00000291074 HS1BP3Q53T59 392 aa23.72■■□□□ 1.39
VPS53-201ENST00000291074 NCOA5Q9HCD5 579 aaKnown RBP23.72■■□□□ 1.39
VPS53-201ENST00000291074 MYO5AQ9Y4I1 1855 aaKnown RBP23.72■■□□□ 1.39
VPS53-201ENST00000291074 A0A0G2JS52 829 aa23.71■■□□□ 1.39
VPS53-201ENST00000291074 CTDNEP1O95476 244 aa23.71■■□□□ 1.39
VPS53-201ENST00000291074 FUCA2Q9BTY2 467 aa23.71■■□□□ 1.39
VPS53-201ENST00000291074 WNK3Q9BYP7 1800 aa23.71■■□□□ 1.39
VPS53-201ENST00000291074 TICAM2Q86XR7 235 aa23.71■■□□□ 1.39
VPS53-201ENST00000291074 NSUN7Q8NE18 718 aaKnown RBP23.71■■□□□ 1.39
VPS53-201ENST00000291074 PUS7LQ9H0K6 701 aaKnown RBP23.71■■□□□ 1.39
VPS53-201ENST00000291074 CNNM1Q9NRU3 951 aa23.71■■□□□ 1.39
VPS53-201ENST00000291074 RESTQ13127 1097 aa23.7■■□□□ 1.39
VPS53-201ENST00000291074 SMARCC2Q8TAQ2 1214 aa23.7■■□□□ 1.39
VPS53-201ENST00000291074 SPATA32Q96LK8 384 aa23.7■■□□□ 1.39
VPS53-201ENST00000291074 USP25Q9UHP3 1055 aa23.7■■□□□ 1.39
VPS53-201ENST00000291074 ELP1O95163 1332 aa23.7■■□□□ 1.39
VPS53-201ENST00000291074 UBN2Q6ZU65 1347 aa23.7■■□□□ 1.39
VPS53-201ENST00000291074 H3BQV1 296 aa23.7■■□□□ 1.38
VPS53-201ENST00000291074 MCAMP43121 646 aa23.7■■□□□ 1.38
VPS53-201ENST00000291074 IFFO2Q5TF58 517 aa23.7■■□□□ 1.38
VPS53-201ENST00000291074 DZIP3Q86Y13 1208 aaKnown RBP23.7■■□□□ 1.38
VPS53-201ENST00000291074 FAM184AQ8NB25 1140 aa23.7■■□□□ 1.38
VPS53-201ENST00000291074 LEO1Q8WVC0 666 aaPredicted RBP23.7■■□□□ 1.38
VPS53-201ENST00000291074 AGXT2Q9BYV1 514 aa23.7■■□□□ 1.38
VPS53-201ENST00000291074 GPHNQ9NQX3 736 aaPredicted RBP23.7■■□□□ 1.38
VPS53-201ENST00000291074 NOL7Q9UMY1 257 aaKnown RBP23.7■■□□□ 1.38
VPS53-201ENST00000291074 ANKRD18BA2A2Z9 1011 aa23.69■■□□□ 1.38
VPS53-201ENST00000291074 PTPDC1A2A3K4 754 aa23.68■■□□□ 1.38
VPS53-201ENST00000291074 SCAND2PQ9GZW5 306 aaPredicted RBP23.68■■□□□ 1.38
VPS53-201ENST00000291074 SLIT2O94813 1529 aa23.68■■□□□ 1.38
VPS53-201ENST00000291074 CAMK4Q16566 473 aa23.67■■□□□ 1.38
VPS53-201ENST00000291074 VGLL2Q8N8G2 317 aa23.67■■□□□ 1.38
VPS53-201ENST00000291074 APPBP2Q92624 585 aa23.67■■□□□ 1.38
VPS53-201ENST00000291074 FGAP02671 866 aa23.67■■□□□ 1.38
VPS53-201ENST00000291074 ZFYP08048 801 aaPredicted RBP23.67■■□□□ 1.38
VPS53-201ENST00000291074 MPNDQ8N594 471 aa23.67■■□□□ 1.38
VPS53-201ENST00000291074 LRRFIP1Q32MZ4 808 aaKnown RBP23.67■■□□□ 1.38
VPS53-201ENST00000291074 LLPHQ9BRT6 129 aaKnown RBP23.67■■□□□ 1.38
VPS53-201ENST00000291074 MYH15Q9Y2K3 1946 aa23.66■■□□□ 1.38
VPS53-201ENST00000291074 CCDC39Q9UFE4 941 aa23.66■■□□□ 1.38
VPS53-201ENST00000291074 FAM177BA6PVY3 158 aa23.66■■□□□ 1.38
VPS53-201ENST00000291074 PDIA3P30101 505 aaKnown RBP23.66■■□□□ 1.38
VPS53-201ENST00000291074 ZKSCAN5Q9Y2L8 839 aa23.66■■□□□ 1.38
VPS53-201ENST00000291074 GPAA1O43292 621 aa23.65■■□□□ 1.38
VPS53-201ENST00000291074 ADAMTS2O95450 1211 aa23.65■■□□□ 1.38
VPS53-201ENST00000291074 IL6STP40189 918 aaPredicted RBP23.65■■□□□ 1.38
VPS53-201ENST00000291074 UVSSAQ2YD98 709 aa23.65■■□□□ 1.38
VPS53-201ENST00000291074 HELBQ8NG08 1087 aaPredicted RBP23.65■■□□□ 1.38
VPS53-201ENST00000291074 PGBD1Q96JS3 809 aa23.65■■□□□ 1.38
VPS53-201ENST00000291074 DACT1Q9NYF0 836 aa23.65■■□□□ 1.38
VPS53-201ENST00000291074 GOLGA6L4A6NEF3 574 aa23.65■■□□□ 1.38
VPS53-201ENST00000291074 PDE8AO60658 829 aa23.65■■□□□ 1.38
VPS53-201ENST00000291074 ACSBG1Q96GR2 724 aa23.65■■□□□ 1.38
VPS53-201ENST00000291074 PTMAP06454 111 aaKnown RBP23.64■■□□□ 1.38
VPS53-201ENST00000291074 CEBPZQ03701 1054 aaKnown RBP23.64■■□□□ 1.38
VPS53-201ENST00000291074 IMMTQ16891 758 aaKnown RBP23.64■■□□□ 1.38
VPS53-201ENST00000291074 NUP62CLQ9H1M0 184 aa23.64■■□□□ 1.38
VPS53-201ENST00000291074 COL22A1Q8NFW1 1626 aaPredicted RBP23.64■■□□□ 1.37
VPS53-201ENST00000291074 ABCC12Q96J65 1359 aa23.64■■□□□ 1.37
VPS53-201ENST00000291074 PHKA1P46020 1223 aa23.63■■□□□ 1.37
VPS53-201ENST00000291074 GUCY1B3Q02153 619 aa23.63■■□□□ 1.37
VPS53-201ENST00000291074 ZNF34Q8IZ26 560 aa23.63■■□□□ 1.37
VPS53-201ENST00000291074 FTOQ9C0B1 505 aaKnown RBP eCLIP23.63■■□□□ 1.37
VPS53-201ENST00000291074 PIH1D3Q9NQM4 214 aaKnown RBP23.63■■□□□ 1.37
VPS53-201ENST00000291074 CTNNA3Q9UI47 895 aa23.63■■□□□ 1.37
VPS53-201ENST00000291074 ERVV-1B6SEH8 477 aa23.63■■□□□ 1.37
VPS53-201ENST00000291074 PDE8BO95263 885 aa23.63■■□□□ 1.37
VPS53-201ENST00000291074 SALL1Q9NSC2 1324 aa23.63■■□□□ 1.37
VPS53-201ENST00000291074 ADCY5O95622 1261 aa23.62■■□□□ 1.37
VPS53-201ENST00000291074 CKAP2LQ8IYA6 745 aa23.62■■□□□ 1.37
VPS53-201ENST00000291074 SNAP23O00161 211 aa23.61■■□□□ 1.37
VPS53-201ENST00000291074 IDH1O75874 414 aaKnown RBP23.61■■□□□ 1.37
VPS53-201ENST00000291074 HMGN5P82970 282 aaKnown RBP23.61■■□□□ 1.37
VPS53-201ENST00000291074 MAP3K11Q16584 847 aa23.61■■□□□ 1.37
VPS53-201ENST00000291074 SLC9C2Q5TAH2 1124 aa23.61■■□□□ 1.37
VPS53-201ENST00000291074 RAB11FIP4Q86YS3 637 aa23.61■■□□□ 1.37
VPS53-201ENST00000291074 BICD2Q8TD16 824 aa23.61■■□□□ 1.37
VPS53-201ENST00000291074 ZNF274Q96GC6 653 aaPredicted RBP23.61■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms