RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 DCAF8Q5TAQ9 597 aa15.81■□□□□ 0.12
SS18-202ENST00000269138 C15orf52Q6ZUT6 534 aaKnown RBP15.81■□□□□ 0.12
SS18-202ENST00000269138 ZC3H4Q9UPT8 1303 aaKnown RBP15.81■□□□□ 0.12
SS18-202ENST00000269138 DICER1Q9UPY3 1922 aaKnown RBP15.8■□□□□ 0.12
SS18-202ENST00000269138 HMMRO75330 724 aa15.8■□□□□ 0.12
SS18-202ENST00000269138 RAD17O75943 681 aa15.8■□□□□ 0.12
SS18-202ENST00000269138 DDNO94850 711 aaPredicted RBP15.8■□□□□ 0.12
SS18-202ENST00000269138 GYG1P46976 350 aa15.8■□□□□ 0.12
SS18-202ENST00000269138 CXCL9Q07325 125 aa15.8■□□□□ 0.12
SS18-202ENST00000269138 OS9Q13438 667 aaPredicted RBP15.8■□□□□ 0.12
SS18-202ENST00000269138 PUM3Q15397 648 aaKnown RBP15.8■□□□□ 0.12
SS18-202ENST00000269138 TIAM2Q8IVF5 1701 aa15.8■□□□□ 0.12
SS18-202ENST00000269138 GLTPD2A6NH11 291 aa15.79■□□□□ 0.12
SS18-202ENST00000269138 EIF6P56537 245 aaKnown RBP15.79■□□□□ 0.12
SS18-202ENST00000269138 TIMM10P62072 90 aa15.79■□□□□ 0.12
SS18-202ENST00000269138 ATP2B3Q16720 1220 aa15.79■□□□□ 0.12
SS18-202ENST00000269138 FAM84BQ96KN1 310 aaPredicted RBP15.79■□□□□ 0.12
SS18-202ENST00000269138 CENPBP07199 599 aaPredicted RBP15.78■□□□□ 0.12
SS18-202ENST00000269138 LPIN2Q92539 896 aa15.78■□□□□ 0.12
SS18-202ENST00000269138 COA1Q9GZY4 146 aa15.78■□□□□ 0.12
SS18-202ENST00000269138 CD209Q9NNX6 404 aa15.78■□□□□ 0.12
SS18-202ENST00000269138 GJA3Q9Y6H8 435 aa15.78■□□□□ 0.12
SS18-202ENST00000269138 APBB1O00213 710 aa15.78■□□□□ 0.12
SS18-202ENST00000269138 IFIT1P09914 478 aaKnown RBP15.78■□□□□ 0.12
SS18-202ENST00000269138 SLC5A1P13866 664 aa15.78■□□□□ 0.12
SS18-202ENST00000269138 ADORA1P30542 326 aa15.78■□□□□ 0.12
SS18-202ENST00000269138 BCAMP50895 628 aa15.78■□□□□ 0.12
SS18-202ENST00000269138 DPY19L2Q6NUT2 758 aa15.78■□□□□ 0.12
SS18-202ENST00000269138 FBXO33Q7Z6M2 555 aa15.78■□□□□ 0.12
SS18-202ENST00000269138 ZNF784Q8NCA9 323 aaPredicted RBP15.78■□□□□ 0.12
SS18-202ENST00000269138 PSMD14O00487 310 aa15.77■□□□□ 0.11
SS18-202ENST00000269138 HIBADHP31937 336 aaKnown RBP15.77■□□□□ 0.11
SS18-202ENST00000269138 CIAPIN1Q6FI81 312 aa15.77■□□□□ 0.11
SS18-202ENST00000269138 ZNF804AQ7Z570 1209 aa15.77■□□□□ 0.11
SS18-202ENST00000269138 PODNQ7Z5L7 613 aa15.77■□□□□ 0.11
SS18-202ENST00000269138 A0A1B0GUL7 405 aa15.76■□□□□ 0.11
SS18-202ENST00000269138 NEUROD6Q96NK8 337 aa15.76■□□□□ 0.11
SS18-202ENST00000269138 NMRK2Q9NPI5 230 aa15.76■□□□□ 0.11
SS18-202ENST00000269138 AKAP2Q9Y2D5 859 aa15.76■□□□□ 0.11
SS18-202ENST00000269138 POTECB2RU33 542 aa15.75■□□□□ 0.11
SS18-202ENST00000269138 IL1R1P14778 569 aa15.75■□□□□ 0.11
SS18-202ENST00000269138 AAMPQ13685 434 aa15.75■□□□□ 0.11
SS18-202ENST00000269138 GPC2Q8N158 579 aa15.75■□□□□ 0.11
SS18-202ENST00000269138 RHPN1Q8TCX5 695 aa15.75■□□□□ 0.11
SS18-202ENST00000269138 MXD3Q9BW11 206 aa15.75■□□□□ 0.11
SS18-202ENST00000269138 IQSEC3Q9UPP2 1182 aaPredicted RBP15.75■□□□□ 0.11
SS18-202ENST00000269138 ZBTB12Q9Y330 459 aaPredicted RBP15.75■□□□□ 0.11
SS18-202ENST00000269138 KDM2BQ8NHM5 1336 aa15.74■□□□□ 0.11
SS18-202ENST00000269138 TNIP1Q15025 636 aa15.74■□□□□ 0.11
SS18-202ENST00000269138 HSP90AB4PQ58FF6 505 aa15.74■□□□□ 0.11
SS18-202ENST00000269138 TNNI3KQ59H18 835 aa15.74■□□□□ 0.11
SS18-202ENST00000269138 CAVIN4Q5BKX8 364 aa15.74■□□□□ 0.11
SS18-202ENST00000269138 ERC1Q8IUD2 1116 aa15.74■□□□□ 0.11
SS18-202ENST00000269138 TDRD7Q8NHU6 1098 aaKnown RBP15.74■□□□□ 0.11
SS18-202ENST00000269138 FBXW7Q969H0 707 aa15.74■□□□□ 0.11
SS18-202ENST00000269138 XAGE2Q96GT9 111 aa15.74■□□□□ 0.11
SS18-202ENST00000269138 DCTPP1Q9H773 170 aa15.74■□□□□ 0.11
SS18-202ENST00000269138 RRAGCQ9HB90 399 aa15.74■□□□□ 0.11
SS18-202ENST00000269138 IL1RAPL2Q9NP60 686 aa15.74■□□□□ 0.11
SS18-202ENST00000269138 JAG2Q9Y219 1238 aa15.74■□□□□ 0.11
SS18-202ENST00000269138 FPGT-TNNI3KV9GXZ4 949 aa15.74■□□□□ 0.11
SS18-202ENST00000269138 ZNF609O15014 1411 aa15.74■□□□□ 0.11
SS18-202ENST00000269138 SCN9AQ15858 1988 aa15.74■□□□□ 0.11
SS18-202ENST00000269138 USP17L3A6NCW0 530 aa15.73■□□□□ 0.11
SS18-202ENST00000269138 USP17L4A6NCW7 530 aa15.73■□□□□ 0.11
SS18-202ENST00000269138 VIL1P09327 827 aaKnown RBP15.73■□□□□ 0.11
SS18-202ENST00000269138 PHKA1P46020 1223 aa15.73■□□□□ 0.11
SS18-202ENST00000269138 GMPSP49915 693 aaPredicted RBP15.73■□□□□ 0.11
SS18-202ENST00000269138 GTF2IP78347 998 aa15.73■□□□□ 0.11
SS18-202ENST00000269138 USP17L1Q7RTZ2 530 aa15.73■□□□□ 0.11
SS18-202ENST00000269138 VPS37DQ86XT2 251 aa15.73■□□□□ 0.11
SS18-202ENST00000269138 EAF2Q96CJ1 260 aaPredicted RBP15.73■□□□□ 0.11
SS18-202ENST00000269138 BCL11AQ9H165 835 aa15.73■□□□□ 0.11
SS18-202ENST00000269138 GPBP1L1Q9HC44 474 aaPredicted RBP15.73■□□□□ 0.11
SS18-202ENST00000269138 GPR108Q9NPR9 543 aa15.73■□□□□ 0.11
SS18-202ENST00000269138 SHTN1A0MZ66 631 aa15.73■□□□□ 0.11
SS18-202ENST00000269138 RAB11FIP3O75154 756 aa15.73■□□□□ 0.11
SS18-202ENST00000269138 DACT2Q5SW24 774 aa15.73■□□□□ 0.11
SS18-202ENST00000269138 TTLL5Q6EMB2 1281 aa15.73■□□□□ 0.11
SS18-202ENST00000269138 KIF1BPQ96EK5 621 aa15.73■□□□□ 0.11
SS18-202ENST00000269138 L3MBTL3Q96JM7 780 aaPredicted RBP15.73■□□□□ 0.11
SS18-202ENST00000269138 DBNDD2Q9BQY9 259 aa15.73■□□□□ 0.11
SS18-202ENST00000269138 CCDC8Q9H0W5 538 aaPredicted RBP15.73■□□□□ 0.11
SS18-202ENST00000269138 SMARCA5O60264 1052 aaPredicted RBP15.72■□□□□ 0.11
SS18-202ENST00000269138 IGHDP01880 384 aa15.72■□□□□ 0.11
SS18-202ENST00000269138 SCNN1DP51172 638 aa15.72■□□□□ 0.11
SS18-202ENST00000269138 HDAC1Q13547 482 aaPredicted RBP15.72■□□□□ 0.11
SS18-202ENST00000269138 STRIP1Q5VSL9 837 aa15.72■□□□□ 0.11
SS18-202ENST00000269138 CCDC102BQ68D86 513 aa15.72■□□□□ 0.11
SS18-202ENST00000269138 TLR7Q9NYK1 1049 aaKnown RBP15.72■□□□□ 0.11
SS18-202ENST00000269138 CHAF1AQ13111 956 aaPredicted RBP15.71■□□□□ 0.11
SS18-202ENST00000269138 RSBN1LQ6PCB5 846 aaPredicted RBP15.71■□□□□ 0.11
SS18-202ENST00000269138 EPS15P42566 896 aa15.7■□□□□ 0.1
SS18-202ENST00000269138 GORABQ5T7V8 394 aa15.7■□□□□ 0.1
SS18-202ENST00000269138 AACSQ86V21 672 aa15.7■□□□□ 0.1
SS18-202ENST00000269138 CERS5Q8N5B7 392 aa15.7■□□□□ 0.1
SS18-202ENST00000269138 GMLQ99445 158 aa15.7■□□□□ 0.1
SS18-202ENST00000269138 DBNLQ9UJU6 430 aaKnown RBP15.7■□□□□ 0.1
SS18-202ENST00000269138 FAM205AQ6ZU69 1335 aa15.7■□□□□ 0.1
SS18-202ENST00000269138 FRAT2O75474 233 aaPredicted RBP15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms