RNA–Protein interactions for RNA: ENST00000262539.7

PTPN3-201, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 5 BASIC

Gene PTPN3, Length 6,832 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-201ENST00000262539 CALM1P0DP23 149 aa9.64□□□□□ -0.87
PTPN3-201ENST00000262539 CALM2P0DP24 149 aa9.64□□□□□ -0.87
PTPN3-201ENST00000262539 CALM3P0DP25 149 aa9.64□□□□□ -0.87
PTPN3-201ENST00000262539 CYP19A1P11511 503 aaPredicted RBP9.64□□□□□ -0.87
PTPN3-201ENST00000262539 PYM1Q9BRP8 204 aaKnown RBP9.64□□□□□ -0.87
PTPN3-201ENST00000262539 NIP7Q9Y221 180 aaKnown RBP eCLIP9.64□□□□□ -0.87
PTPN3-201ENST00000262539 A0A1B0GUL7 405 aa9.63□□□□□ -0.87
PTPN3-201ENST00000262539 PDE8BO95263 885 aa9.63□□□□□ -0.87
PTPN3-201ENST00000262539 MAP4K4O95819 1239 aaPredicted RBP9.63□□□□□ -0.87
PTPN3-201ENST00000262539 NLRP10Q86W26 655 aa9.63□□□□□ -0.87
PTPN3-201ENST00000262539 PI4K2BQ8TCG2 481 aa9.63□□□□□ -0.87
PTPN3-201ENST00000262539 TBC1D22AQ8WUA7 517 aa9.63□□□□□ -0.87
PTPN3-201ENST00000262539 KCNB2Q92953 911 aa9.63□□□□□ -0.87
PTPN3-201ENST00000262539 PALLDQ8WX93 1383 aa9.63□□□□□ -0.87
PTPN3-201ENST00000262539 ANKRD20A12PQ8NF67 263 aa9.63□□□□□ -0.87
PTPN3-201ENST00000262539 BCL9O00512 1426 aa9.63□□□□□ -0.87
PTPN3-201ENST00000262539 GNAQP50148 359 aa9.63□□□□□ -0.87
PTPN3-201ENST00000262539 NAP1L1P55209 391 aaKnown RBP9.63□□□□□ -0.87
PTPN3-201ENST00000262539 PROSER3Q2NL68 480 aa9.63□□□□□ -0.87
PTPN3-201ENST00000262539 BAG3O95817 575 aa9.63□□□□□ -0.87
PTPN3-201ENST00000262539 CTSWP56202 376 aa9.63□□□□□ -0.87
PTPN3-201ENST00000262539 GRIPAP1Q4V328 841 aa9.63□□□□□ -0.87
PTPN3-201ENST00000262539 LARP1BQ659C4 914 aaKnown RBP9.63□□□□□ -0.87
PTPN3-201ENST00000262539 NBPF5PQ86XG9 351 aaPredicted RBP9.63□□□□□ -0.87
PTPN3-201ENST00000262539 GOLGA6L19H0YKK7 550 aa9.63□□□□□ -0.87
PTPN3-201ENST00000262539 DDX19AQ9NUU7 478 aaKnown RBP9.63□□□□□ -0.87
PTPN3-201ENST00000262539 CASTP20810 708 aaKnown RBP9.62□□□□□ -0.87
PTPN3-201ENST00000262539 GIMAP6Q6P9H5 292 aa9.62□□□□□ -0.87
PTPN3-201ENST00000262539 DBNDD2Q9BQY9 259 aa9.62□□□□□ -0.87
PTPN3-201ENST00000262539 MPHOSPH10O00566 681 aaKnown RBP9.62□□□□□ -0.87
PTPN3-201ENST00000262539 PDS5AQ29RF7 1337 aaKnown RBP9.62□□□□□ -0.87
PTPN3-201ENST00000262539 NAPBQ9H115 298 aa9.62□□□□□ -0.87
PTPN3-201ENST00000262539 MAST3O60307 1309 aa9.62□□□□□ -0.87
PTPN3-201ENST00000262539 ZNF213O14771 459 aa9.62□□□□□ -0.87
PTPN3-201ENST00000262539 TFCP2Q12800 502 aa9.62□□□□□ -0.87
PTPN3-201ENST00000262539 SLC27A3Q5K4L6 730 aa9.62□□□□□ -0.87
PTPN3-201ENST00000262539 NBPF26B4DH59 902 aa9.62□□□□□ -0.87
PTPN3-201ENST00000262539 NBPF14Q5TI25 921 aa9.62□□□□□ -0.87
PTPN3-201ENST00000262539 NBPF10Q6P3W6 841 aaKnown RBP9.62□□□□□ -0.87
PTPN3-201ENST00000262539 NBPF15Q8N660 670 aa9.62□□□□□ -0.87
PTPN3-201ENST00000262539 ZNF772Q68DY9 489 aaPredicted RBP9.62□□□□□ -0.87
PTPN3-201ENST00000262539 NARFQ9UHQ1 456 aa9.62□□□□□ -0.87
PTPN3-201ENST00000262539 ALX1Q15699 326 aa9.62□□□□□ -0.87
PTPN3-201ENST00000262539 CREB3L3Q68CJ9 461 aa9.62□□□□□ -0.87
PTPN3-201ENST00000262539 NAA16Q6N069 864 aaPredicted RBP9.62□□□□□ -0.87
PTPN3-201ENST00000262539 ZMYM1Q5SVZ6 1142 aa9.61□□□□□ -0.87
PTPN3-201ENST00000262539 ZNF34Q8IZ26 560 aa9.61□□□□□ -0.87
PTPN3-201ENST00000262539 NLGN1Q8N2Q7 840 aa9.61□□□□□ -0.87
PTPN3-201ENST00000262539 ZSWIM6Q9HCJ5 1215 aa9.61□□□□□ -0.87
PTPN3-201ENST00000262539 CCNL1Q9UK58 526 aaPredicted RBP9.61□□□□□ -0.87
PTPN3-201ENST00000262539 USP21Q9UK80 565 aa9.61□□□□□ -0.87
PTPN3-201ENST00000262539 MYCNP04198 464 aaPredicted RBP9.61□□□□□ -0.87
PTPN3-201ENST00000262539 ITGA6P23229 1130 aa9.61□□□□□ -0.87
PTPN3-201ENST00000262539 PIP4K2AP48426 406 aaPredicted RBP9.61□□□□□ -0.87
PTPN3-201ENST00000262539 NMIQ13287 307 aaPredicted RBP9.61□□□□□ -0.87
PTPN3-201ENST00000262539 UVSSAQ2YD98 709 aa9.61□□□□□ -0.87
PTPN3-201ENST00000262539 LRP2BPQ9P2M1 347 aa9.61□□□□□ -0.87
PTPN3-201ENST00000262539 ZBTB1Q9Y2K1 713 aa9.61□□□□□ -0.87
PTPN3-201ENST00000262539 GOLIM4O00461 696 aa9.61□□□□□ -0.87
PTPN3-201ENST00000262539 ST5P78524 1137 aa9.61□□□□□ -0.87
PTPN3-201ENST00000262539 SF3B3Q15393 1217 aaKnown RBP9.61□□□□□ -0.87
PTPN3-201ENST00000262539 IQCA1Q86XH1 822 aa9.61□□□□□ -0.87
PTPN3-201ENST00000262539 EYA3Q99504 573 aa9.61□□□□□ -0.87
PTPN3-201ENST00000262539 UPF3BQ9BZI7 483 aaKnown RBP9.61□□□□□ -0.87
PTPN3-201ENST00000262539 FAM208AQ9UK61 1670 aaKnown RBP9.61□□□□□ -0.87
PTPN3-201ENST00000262539 SASH1O94885 1247 aa9.61□□□□□ -0.87
PTPN3-201ENST00000262539 STX6O43752 255 aa9.61□□□□□ -0.87
PTPN3-201ENST00000262539 BRD1O95696 1058 aa9.61□□□□□ -0.87
PTPN3-201ENST00000262539 RFC4P35249 363 aa9.61□□□□□ -0.87
PTPN3-201ENST00000262539 USPL1Q5W0Q7 1092 aa9.61□□□□□ -0.87
PTPN3-201ENST00000262539 TNPO1Q92973 898 aaKnown RBP9.61□□□□□ -0.87
PTPN3-201ENST00000262539 DBNLQ9UJU6 430 aaKnown RBP9.61□□□□□ -0.87
PTPN3-201ENST00000262539 BECN2A8MW95 431 aa9.6□□□□□ -0.87
PTPN3-201ENST00000262539 IPO7O95373 1038 aaKnown RBP9.6□□□□□ -0.87
PTPN3-201ENST00000262539 BAG4O95429 457 aaKnown RBP9.6□□□□□ -0.87
PTPN3-201ENST00000262539 FKBP4Q02790 459 aaKnown RBP eCLIP9.6□□□□□ -0.87
PTPN3-201ENST00000262539 RUFY3Q7L099 469 aa9.6□□□□□ -0.87
PTPN3-201ENST00000262539 WDR66Q8TBY9 1149 aa9.6□□□□□ -0.87
PTPN3-201ENST00000262539 ZNF274Q96GC6 653 aaPredicted RBP9.6□□□□□ -0.87
PTPN3-201ENST00000262539 UBAC1Q9BSL1 405 aa9.6□□□□□ -0.87
PTPN3-201ENST00000262539 PA2G4Q9UQ80 394 aaKnown RBP9.6□□□□□ -0.87
PTPN3-201ENST00000262539 VPS37CA5D8V6 355 aaPredicted RBP9.6□□□□□ -0.87
PTPN3-201ENST00000262539 RFX5P48382 616 aaPredicted RBP9.6□□□□□ -0.87
PTPN3-201ENST00000262539 TRAPPC3LQ5T215 181 aa9.6□□□□□ -0.87
PTPN3-201ENST00000262539 C16orf71Q8IYS4 520 aaPredicted RBP9.6□□□□□ -0.87
PTPN3-201ENST00000262539 OTUD7AQ8TE49 926 aaPredicted RBP9.6□□□□□ -0.87
PTPN3-201ENST00000262539 TTLL7Q6ZT98 887 aa9.6□□□□□ -0.87
PTPN3-201ENST00000262539 TTLL11Q8NHH1 800 aa9.6□□□□□ -0.87
PTPN3-201ENST00000262539 IDH1O75874 414 aaKnown RBP9.6□□□□□ -0.87
PTPN3-201ENST00000262539 TNNT3P45378 269 aaPredicted RBP9.6□□□□□ -0.87
PTPN3-201ENST00000262539 ESR2Q92731 530 aa9.6□□□□□ -0.87
PTPN3-201ENST00000262539 LSG1Q9H089 658 aaKnown RBP9.6□□□□□ -0.87
PTPN3-201ENST00000262539 NAT10Q9H0A0 1025 aaKnown RBP9.6□□□□□ -0.87
PTPN3-201ENST00000262539 LEMD3Q9Y2U8 911 aa9.6□□□□□ -0.87
PTPN3-201ENST00000262539 RPS8P62241 208 aaKnown RBP9.6□□□□□ -0.87
PTPN3-201ENST00000262539 SLC10A5Q5PT55 438 aa9.6□□□□□ -0.87
PTPN3-201ENST00000262539 BRAPQ7Z569 592 aa9.6□□□□□ -0.87
PTPN3-201ENST00000262539 CRNKL1Q9BZJ0 848 aaKnown RBP9.6□□□□□ -0.87
PTPN3-201ENST00000262539 TEX2Q8IWB9 1127 aa9.59□□□□□ -0.87
PTPN3-201ENST00000262539 ANTXR1Q9H6X2 564 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 104.3 ms