RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 DCTPP1Q9H773 170 aa10.54□□□□□ -0.72
VPS4B-201ENST00000238497 CDC45O75419 566 aa10.54□□□□□ -0.72
VPS4B-201ENST00000238497 MAP1SQ66K74 1059 aaPredicted RBP10.54□□□□□ -0.72
VPS4B-201ENST00000238497 CIAPIN1Q6FI81 312 aa10.54□□□□□ -0.72
VPS4B-201ENST00000238497 TMC4Q7Z404 712 aa10.54□□□□□ -0.72
VPS4B-201ENST00000238497 EYA3Q99504 573 aa10.54□□□□□ -0.72
VPS4B-201ENST00000238497 GGA1Q9UJY5 639 aa10.54□□□□□ -0.72
VPS4B-201ENST00000238497 PCNTO95613 3336 aa10.54□□□□□ -0.72
VPS4B-201ENST00000238497 SBF1O95248 1867 aa10.53□□□□□ -0.72
VPS4B-201ENST00000238497 POTECB2RU33 542 aa10.53□□□□□ -0.72
VPS4B-201ENST00000238497 DTNBO60941 627 aa10.53□□□□□ -0.72
VPS4B-201ENST00000238497 NBPF7P0C2Y1 421 aaPredicted RBP10.53□□□□□ -0.72
VPS4B-201ENST00000238497 GSPT1P15170 499 aaKnown RBP10.53□□□□□ -0.72
VPS4B-201ENST00000238497 EPS15P42566 896 aa10.53□□□□□ -0.72
VPS4B-201ENST00000238497 CXCL9Q07325 125 aa10.53□□□□□ -0.72
VPS4B-201ENST00000238497 GRM1Q13255 1194 aa10.53□□□□□ -0.72
VPS4B-201ENST00000238497 GPC2Q8N158 579 aa10.53□□□□□ -0.72
VPS4B-201ENST00000238497 FZD9O00144 591 aa10.53□□□□□ -0.72
VPS4B-201ENST00000238497 NCLP19338 710 aaKnown RBP10.53□□□□□ -0.72
VPS4B-201ENST00000238497 SDSP20132 328 aa10.53□□□□□ -0.72
VPS4B-201ENST00000238497 FSTL1Q12841 308 aa10.53□□□□□ -0.72
VPS4B-201ENST00000238497 CHADLQ6NUI6 762 aa10.53□□□□□ -0.72
VPS4B-201ENST00000238497 PAXIP1Q6ZW49 1069 aaPredicted RBP10.53□□□□□ -0.72
VPS4B-201ENST00000238497 TTLL11Q8NHH1 800 aa10.53□□□□□ -0.72
VPS4B-201ENST00000238497 ANO2Q9NQ90 1003 aa10.53□□□□□ -0.72
VPS4B-201ENST00000238497 PTPRCP08575 1304 aa10.53□□□□□ -0.72
VPS4B-201ENST00000238497 GNAI3P08754 354 aa10.53□□□□□ -0.72
VPS4B-201ENST00000238497 KIAA2012Q0VF49 1180 aa10.53□□□□□ -0.72
VPS4B-201ENST00000238497 POLLQ9UGP5 575 aa10.53□□□□□ -0.72
VPS4B-201ENST00000238497 ZBTB12Q9Y330 459 aaPredicted RBP10.53□□□□□ -0.72
VPS4B-201ENST00000238497 ITGA6P23229 1130 aa10.52□□□□□ -0.73
VPS4B-201ENST00000238497 BMP2KLQ5H9B9 411 aa10.52□□□□□ -0.73
VPS4B-201ENST00000238497 RIC1Q4ADV7 1423 aa10.52□□□□□ -0.73
VPS4B-201ENST00000238497 GMPSP49915 693 aaPredicted RBP10.52□□□□□ -0.73
VPS4B-201ENST00000238497 GSE1Q14687 1217 aa10.52□□□□□ -0.73
VPS4B-201ENST00000238497 HELBQ8NG08 1087 aaPredicted RBP10.52□□□□□ -0.73
VPS4B-201ENST00000238497 TBC1D16Q8TBP0 767 aa10.52□□□□□ -0.73
VPS4B-201ENST00000238497 LRRCC1Q9C099 1032 aa10.52□□□□□ -0.73
VPS4B-201ENST00000238497 DLEC1Q9Y238 1755 aa10.52□□□□□ -0.73
VPS4B-201ENST00000238497 IFIT5Q13325 482 aaKnown RBP10.51□□□□□ -0.73
VPS4B-201ENST00000238497 TNIP1Q15025 636 aa10.51□□□□□ -0.73
VPS4B-201ENST00000238497 LMBR1LQ6UX01 489 aa10.51□□□□□ -0.73
VPS4B-201ENST00000238497 PA2G4Q9UQ80 394 aaKnown RBP10.51□□□□□ -0.73
VPS4B-201ENST00000238497 ANKRD18BA2A2Z9 1011 aa10.51□□□□□ -0.73
VPS4B-201ENST00000238497 H7C1W4 665 aa10.51□□□□□ -0.73
VPS4B-201ENST00000238497 CCDC57Q2TAC2 916 aa10.51□□□□□ -0.73
VPS4B-201ENST00000238497 LARP6Q9BRS8 491 aaKnown RBP10.51□□□□□ -0.73
VPS4B-201ENST00000238497 ZNF408Q9H9D4 720 aa10.51□□□□□ -0.73
VPS4B-201ENST00000238497 GRM8O00222 908 aa10.51□□□□□ -0.73
VPS4B-201ENST00000238497 PNMA8AQ86V59 439 aaPredicted RBP10.51□□□□□ -0.73
VPS4B-201ENST00000238497 LDHDQ86WU2 507 aa10.51□□□□□ -0.73
VPS4B-201ENST00000238497 CNNM1Q9NRU3 951 aa10.51□□□□□ -0.73
VPS4B-201ENST00000238497 MKRN1Q9UHC7 482 aaKnown RBP10.51□□□□□ -0.73
VPS4B-201ENST00000238497 CDHR2Q9BYE9 1310 aa10.51□□□□□ -0.73
VPS4B-201ENST00000238497 TAF1P21675 1872 aa10.5□□□□□ -0.73
VPS4B-201ENST00000238497 ECE2O60344 883 aa10.5□□□□□ -0.73
VPS4B-201ENST00000238497 BEND3Q5T5X7 828 aa10.5□□□□□ -0.73
VPS4B-201ENST00000238497 USP44Q9H0E7 712 aa10.5□□□□□ -0.73
VPS4B-201ENST00000238497 KCNQ5Q9NR82 932 aa10.5□□□□□ -0.73
VPS4B-201ENST00000238497 FER1L6Q2WGJ9 1857 aa10.5□□□□□ -0.73
VPS4B-201ENST00000238497 H7C1D1 291 aa10.5□□□□□ -0.73
VPS4B-201ENST00000238497 CD2BP2O95400 341 aaKnown RBP10.5□□□□□ -0.73
VPS4B-201ENST00000238497 TTC22Q5TAA0 569 aa10.5□□□□□ -0.73
VPS4B-201ENST00000238497 XDHP47989 1333 aa10.5□□□□□ -0.73
VPS4B-201ENST00000238497 BRPF1P55201 1214 aaPredicted RBP10.5□□□□□ -0.73
VPS4B-201ENST00000238497 CNTROBQ8N137 903 aa10.5□□□□□ -0.73
VPS4B-201ENST00000238497 KLHDC4Q8TBB5 520 aa10.5□□□□□ -0.73
VPS4B-201ENST00000238497 ZNF594Q96JF6 807 aaPredicted RBP10.5□□□□□ -0.73
VPS4B-201ENST00000238497 L3MBTL3Q96JM7 780 aaPredicted RBP10.5□□□□□ -0.73
VPS4B-201ENST00000238497 WTIPA6NIX2 430 aaPredicted RBP10.49□□□□□ -0.73
VPS4B-201ENST00000238497 PSMD14O00487 310 aa10.49□□□□□ -0.73
VPS4B-201ENST00000238497 CNOT7Q9UIV1 285 aaKnown RBP10.49□□□□□ -0.73
VPS4B-201ENST00000238497 ABT1Q9ULW3 272 aaKnown RBP10.49□□□□□ -0.73
VPS4B-201ENST00000238497 MINPP1Q9UNW1 487 aa10.49□□□□□ -0.73
VPS4B-201ENST00000238497 SNAP23O00161 211 aa10.49□□□□□ -0.73
VPS4B-201ENST00000238497 TAF5LO75529 589 aa10.49□□□□□ -0.73
VPS4B-201ENST00000238497 SCNN1DP51172 638 aa10.49□□□□□ -0.73
VPS4B-201ENST00000238497 TBC1D10BQ4KMP7 808 aaPredicted RBP10.49□□□□□ -0.73
VPS4B-201ENST00000238497 RTFDC1Q9BY42 306 aaPredicted RBP10.49□□□□□ -0.73
VPS4B-201ENST00000238497 YDJCA8MPS7 323 aa10.48□□□□□ -0.73
VPS4B-201ENST00000238497 PDE1AP54750 535 aa10.48□□□□□ -0.73
VPS4B-201ENST00000238497 LDHAL6AQ6ZMR3 332 aa10.48□□□□□ -0.73
VPS4B-201ENST00000238497 TAOK2Q9UL54 1235 aa10.48□□□□□ -0.73
VPS4B-201ENST00000238497 BRPF3Q9ULD4 1205 aa10.48□□□□□ -0.73
VPS4B-201ENST00000238497 SHTN1A0MZ66 631 aa10.48□□□□□ -0.73
VPS4B-201ENST00000238497 ATP2B4P23634 1241 aa10.48□□□□□ -0.73
VPS4B-201ENST00000238497 SAMD7Q7Z3H4 446 aa10.48□□□□□ -0.73
VPS4B-201ENST00000238497 MICALL2Q8IY33 904 aa10.48□□□□□ -0.73
VPS4B-201ENST00000238497 IL27Q8NEV9 243 aa10.48□□□□□ -0.73
VPS4B-201ENST00000238497 GPRC5DQ9NZD1 345 aa10.48□□□□□ -0.73
VPS4B-201ENST00000238497 MX1P20591 662 aa10.48□□□□□ -0.73
VPS4B-201ENST00000238497 EPHA10Q5JZY3 1008 aa10.48□□□□□ -0.73
VPS4B-201ENST00000238497 UPF3BQ9BZI7 483 aaKnown RBP10.48□□□□□ -0.73
VPS4B-201ENST00000238497 BSDC1Q9NW68 430 aaPredicted RBP10.48□□□□□ -0.73
VPS4B-201ENST00000238497 ARFGEF2Q9Y6D5 1785 aa10.48□□□□□ -0.73
VPS4B-201ENST00000238497 ANKRD36CQ5JPF3 1778 aa10.47□□□□□ -0.73
VPS4B-201ENST00000238497 ALDH1L1O75891 902 aa10.47□□□□□ -0.73
VPS4B-201ENST00000238497 NEK4P51957 841 aa10.47□□□□□ -0.73
VPS4B-201ENST00000238497 FMR1Q06787 632 aaKnown RBP eCLIP10.47□□□□□ -0.73
VPS4B-201ENST00000238497 VPS33BQ9H267 617 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms