RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.98□□□□□ -0.01
MSH2-201ENST00000233146 FAM177A1Q8N128 213 aaPredicted RBP14.98□□□□□ -0.01
MSH2-201ENST00000233146 ARMC2Q8NEN0 867 aa14.98□□□□□ -0.01
MSH2-201ENST00000233146 NAT10Q9H0A0 1025 aaKnown RBP14.98□□□□□ -0.01
MSH2-201ENST00000233146 MYO1FO00160 1098 aa14.97□□□□□ -0.01
MSH2-201ENST00000233146 FSBPO95073 299 aa14.97□□□□□ -0.01
MSH2-201ENST00000233146 IPO7O95373 1038 aaKnown RBP14.97□□□□□ -0.01
MSH2-201ENST00000233146 ICA1Q05084 483 aa14.97□□□□□ -0.01
MSH2-201ENST00000233146 OS9Q13438 667 aaPredicted RBP14.97□□□□□ -0.01
MSH2-201ENST00000233146 NUTM1Q86Y26 1132 aa14.97□□□□□ -0.01
MSH2-201ENST00000233146 PPP6R1Q9UPN7 881 aa14.97□□□□□ -0.01
MSH2-201ENST00000233146 PPP2R2CQ9Y2T4 447 aa14.97□□□□□ -0.01
MSH2-201ENST00000233146 RPGRIP1LQ68CZ1 1315 aa14.97□□□□□ -0.01
MSH2-201ENST00000233146 ATXN2Q99700 1313 aaKnown RBP14.97□□□□□ -0.01
MSH2-201ENST00000233146 ME3Q16798 604 aa14.97□□□□□ -0.01
MSH2-201ENST00000233146 STAP2Q9UGK3 403 aa14.97□□□□□ -0.01
MSH2-201ENST00000233146 GOLGA6L9A6NEM1 432 aa14.97□□□□□ -0.01
MSH2-201ENST00000233146 LRRIQ3A6PVS8 624 aaPredicted RBP14.97□□□□□ -0.01
MSH2-201ENST00000233146 CUTAO60888 179 aa14.97□□□□□ -0.01
MSH2-201ENST00000233146 MYBL2P10244 700 aa14.97□□□□□ -0.01
MSH2-201ENST00000233146 CFAP70Q5T0N1 1121 aa14.97□□□□□ -0.01
MSH2-201ENST00000233146 BAG1Q99933 345 aaPredicted RBP14.97□□□□□ -0.01
MSH2-201ENST00000233146 LSG1Q9H089 658 aaKnown RBP14.97□□□□□ -0.01
MSH2-201ENST00000233146 CDHR2Q9BYE9 1310 aa14.96□□□□□ -0.01
MSH2-201ENST00000233146 MEIS3Q99687 375 aa14.96□□□□□ -0.01
MSH2-201ENST00000233146 TEX13AQ9BXU3 409 aaPredicted RBP14.95□□□□□ -0.02
MSH2-201ENST00000233146 GBP3Q9H0R5 595 aa14.95□□□□□ -0.02
MSH2-201ENST00000233146 NUCKS1Q9H1E3 243 aaKnown RBP14.95□□□□□ -0.02
MSH2-201ENST00000233146 VIPAS39Q9H9C1 493 aa14.95□□□□□ -0.02
MSH2-201ENST00000233146 MBIPQ9NS73 344 aa14.95□□□□□ -0.02
MSH2-201ENST00000233146 SETD1AO15047 1707 aaKnown RBP14.95□□□□□ -0.02
MSH2-201ENST00000233146 PLCH2O75038 1416 aa14.95□□□□□ -0.02
MSH2-201ENST00000233146 EME2A4GXA9 379 aaPredicted RBP14.95□□□□□ -0.02
MSH2-201ENST00000233146 TUBB4BP68371 445 aa14.95□□□□□ -0.02
MSH2-201ENST00000233146 CEP112Q8N8E3 955 aa14.95□□□□□ -0.02
MSH2-201ENST00000233146 NECAB1Q8N987 351 aa14.95□□□□□ -0.02
MSH2-201ENST00000233146 C8orf58Q8NAV2 365 aa14.95□□□□□ -0.02
MSH2-201ENST00000233146 SPATS2LQ9NUQ6 558 aaKnown RBP14.95□□□□□ -0.02
MSH2-201ENST00000233146 A0A1B0GUA9 196 aa14.95□□□□□ -0.02
MSH2-201ENST00000233146 IRAK1P51617 712 aa14.95□□□□□ -0.02
MSH2-201ENST00000233146 RWDD2BP57060 319 aa14.95□□□□□ -0.02
MSH2-201ENST00000233146 ZSWIM4Q9H7M6 989 aa14.95□□□□□ -0.02
MSH2-201ENST00000233146 RPS6KL1Q9Y6S9 549 aa14.95□□□□□ -0.02
MSH2-201ENST00000233146 WDHD1O75717 1129 aaPredicted RBP14.94□□□□□ -0.02
MSH2-201ENST00000233146 BPIFA3Q9BQP9 254 aa14.94□□□□□ -0.02
MSH2-201ENST00000233146 THUMPD2Q9BTF0 503 aaKnown RBP14.94□□□□□ -0.02
MSH2-201ENST00000233146 FBXO3Q9UK99 471 aa14.94□□□□□ -0.02
MSH2-201ENST00000233146 MRC2Q9UBG0 1479 aa14.94□□□□□ -0.02
MSH2-201ENST00000233146 VSNL1P62760 191 aa14.94□□□□□ -0.02
MSH2-201ENST00000233146 TRPM2O94759 1503 aa14.94□□□□□ -0.02
MSH2-201ENST00000233146 RBM5P52756 815 aaKnown RBP eCLIP14.94□□□□□ -0.021e-6■■□□□ 13.4
MSH2-201ENST00000233146 TMEM139Q8IV31 216 aa14.94□□□□□ -0.02
MSH2-201ENST00000233146 ANKRD18AQ8IVF6 992 aa14.94□□□□□ -0.02
MSH2-201ENST00000233146 IGSF22Q8N9C0 903 aa14.94□□□□□ -0.02
MSH2-201ENST00000233146 EFCAB6Q5THR3 1501 aa14.93□□□□□ -0.02
MSH2-201ENST00000233146 ARHGAP6O43182 974 aa14.93□□□□□ -0.02
MSH2-201ENST00000233146 TRAF1Q13077 416 aa14.93□□□□□ -0.02
MSH2-201ENST00000233146 KAT14Q9H8E8 782 aa14.93□□□□□ -0.02
MSH2-201ENST00000233146 CAND2O75155 1236 aa14.93□□□□□ -0.02
MSH2-201ENST00000233146 CHGAP10645 457 aaKnown RBP14.93□□□□□ -0.02
MSH2-201ENST00000233146 ZSWIM6Q9HCJ5 1215 aa14.93□□□□□ -0.02
MSH2-201ENST00000233146 IRAK4Q9NWZ3 460 aa14.93□□□□□ -0.02
MSH2-201ENST00000233146 ATP2B2Q01814 1243 aa14.92□□□□□ -0.02
MSH2-201ENST00000233146 LRRCC1Q9C099 1032 aa14.92□□□□□ -0.02
MSH2-201ENST00000233146 ANKRD18BA2A2Z9 1011 aa14.92□□□□□ -0.02
MSH2-201ENST00000233146 TUBBP07437 444 aa14.92□□□□□ -0.02
MSH2-201ENST00000233146 CLNS1AP54105 237 aaKnown RBP14.92□□□□□ -0.02
MSH2-201ENST00000233146 TLDC1Q6P9B6 456 aa14.92□□□□□ -0.02
MSH2-201ENST00000233146 SMARCC1Q92922 1105 aaPredicted RBP14.92□□□□□ -0.02
MSH2-201ENST00000233146 TM6SF1Q9BZW5 370 aa14.92□□□□□ -0.02
MSH2-201ENST00000233146 GOLPH3LQ9H4A5 285 aa14.92□□□□□ -0.02
MSH2-201ENST00000233146 KLC4Q9NSK0 619 aa14.92□□□□□ -0.02
MSH2-201ENST00000233146 SAMD9LQ8IVG5 1584 aa14.92□□□□□ -0.02
MSH2-201ENST00000233146 FCHSD2O94868 740 aa14.92□□□□□ -0.02
MSH2-201ENST00000233146 ARID4AP29374 1257 aaPredicted RBP14.92□□□□□ -0.02
MSH2-201ENST00000233146 LARP1Q6PKG0 1096 aaKnown RBP14.92□□□□□ -0.02
MSH2-201ENST00000233146 CCAR1Q8IX12 1150 aaKnown RBP14.92□□□□□ -0.02
MSH2-201ENST00000233146 MICAL1Q8TDZ2 1067 aa14.92□□□□□ -0.02
MSH2-201ENST00000233146 TARBP1Q13395 1621 aaKnown RBP14.91□□□□□ -0.02
MSH2-201ENST00000233146 ENGASEQ8NFI3 743 aa14.91□□□□□ -0.02
MSH2-201ENST00000233146 BCAS4Q8TDM0 211 aa14.91□□□□□ -0.02
MSH2-201ENST00000233146 ERCC4Q92889 916 aaPredicted RBP14.91□□□□□ -0.02
MSH2-201ENST00000233146 CPSF2Q9P2I0 782 aaKnown RBP14.91□□□□□ -0.02
MSH2-201ENST00000233146 PUF60Q9UHX1 559 aaKnown RBP14.91□□□□□ -0.02
MSH2-201ENST00000233146 TPCN1Q9ULQ1 816 aa14.91□□□□□ -0.02
MSH2-201ENST00000233146 AOX1Q06278 1338 aa14.91□□□□□ -0.02
MSH2-201ENST00000233146 SHTN1A0MZ66 631 aa14.91□□□□□ -0.02
MSH2-201ENST00000233146 CCDC12Q8WUD4 166 aaPredicted RBP14.91□□□□□ -0.02
MSH2-201ENST00000233146 CHD2O14647 1828 aaKnown RBP14.91□□□□□ -0.02
MSH2-201ENST00000233146 MAP3K4Q9Y6R4 1608 aa14.91□□□□□ -0.02
MSH2-201ENST00000233146 ZC3H4Q9UPT8 1303 aaKnown RBP14.91□□□□□ -0.02
MSH2-201ENST00000233146 DDX20Q9UHI6 824 aaKnown RBP14.91□□□□□ -0.02
MSH2-201ENST00000233146 CDC23Q9UJX2 597 aa14.91□□□□□ -0.02
MSH2-201ENST00000233146 CYP46A1Q9Y6A2 500 aa14.91□□□□□ -0.02
MSH2-201ENST00000233146 LRRC7Q96NW7 1537 aa14.9□□□□□ -0.02
MSH2-201ENST00000233146 ADAMTS12P58397 1594 aa14.9□□□□□ -0.02
MSH2-201ENST00000233146 SMTNP53814 917 aa14.9□□□□□ -0.02
MSH2-201ENST00000233146 ADCK5Q3MIX3 580 aa14.9□□□□□ -0.02
MSH2-201ENST00000233146 THOC1Q96FV9 657 aaKnown RBP14.9□□□□□ -0.02
MSH2-201ENST00000233146 NEURL4Q96JN8 1562 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms