RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 PDIA4P13667 645 aaKnown RBP22.78■■□□□ 1.24
YBX3-201ENST00000228251 ZAP70P43403 619 aa22.78■■□□□ 1.24
YBX3-201ENST00000228251 USP48Q86UV5 1035 aa22.78■■□□□ 1.24
YBX3-201ENST00000228251 ATRNO75882 1429 aa22.78■■□□□ 1.24
YBX3-201ENST00000228251 TOM1O60784 492 aa22.78■■□□□ 1.24
YBX3-201ENST00000228251 NCLP19338 710 aaKnown RBP22.78■■□□□ 1.24
YBX3-201ENST00000228251 FGFR2P21802 821 aa22.78■■□□□ 1.24
YBX3-201ENST00000228251 MCAMP43121 646 aa22.78■■□□□ 1.24
YBX3-201ENST00000228251 EXOSC10Q01780 885 aaKnown RBP22.78■■□□□ 1.24
YBX3-201ENST00000228251 FKBP4Q02790 459 aaKnown RBP eCLIP22.78■■□□□ 1.24
YBX3-201ENST00000228251 GORABQ5T7V8 394 aa22.78■■□□□ 1.24
YBX3-201ENST00000228251 SCN7AQ01118 1682 aa22.77■■□□□ 1.24
YBX3-201ENST00000228251 GADD45BO75293 160 aaPredicted RBP22.77■■□□□ 1.24
YBX3-201ENST00000228251 LRRFIP1Q32MZ4 808 aaKnown RBP22.77■■□□□ 1.24
YBX3-201ENST00000228251 GTF3C6Q969F1 213 aa22.77■■□□□ 1.24
YBX3-201ENST00000228251 CNNM1Q9NRU3 951 aa22.77■■□□□ 1.24
YBX3-201ENST00000228251 A0A0G2JLW4 131 aa22.76■■□□□ 1.23
YBX3-201ENST00000228251 HMGB1P09429 215 aaKnown RBP22.76■■□□□ 1.23
YBX3-201ENST00000228251 PARP10Q53GL7 1025 aa22.76■■□□□ 1.23
YBX3-201ENST00000228251 PI16Q6UXB8 463 aa22.76■■□□□ 1.23
YBX3-201ENST00000228251 Q6ZUG5 572 aa22.76■■□□□ 1.23
YBX3-201ENST00000228251 SMARCC1Q92922 1105 aaPredicted RBP22.76■■□□□ 1.23
YBX3-201ENST00000228251 THSD7AQ9UPZ6 1657 aa22.76■■□□□ 1.23
YBX3-201ENST00000228251 KCNQ2O43526 872 aa22.76■■□□□ 1.23
YBX3-201ENST00000228251 DTNBO60941 627 aa22.76■■□□□ 1.23
YBX3-201ENST00000228251 NTSR2O95665 410 aa22.76■■□□□ 1.23
YBX3-201ENST00000228251 ARID4AP29374 1257 aaPredicted RBP22.76■■□□□ 1.23
YBX3-201ENST00000228251 APPBP2Q92624 585 aa22.76■■□□□ 1.23
YBX3-201ENST00000228251 GDPD2Q9HCC8 539 aa22.76■■□□□ 1.23
YBX3-201ENST00000228251 CNPY2Q9Y2B0 182 aa22.76■■□□□ 1.23
YBX3-201ENST00000228251 DHX32Q7L7V1 743 aaKnown RBP22.75■■□□□ 1.23
YBX3-201ENST00000228251 UTP14AQ9BVJ6 771 aaKnown RBP22.75■■□□□ 1.23
YBX3-201ENST00000228251 ATP6V1DQ9Y5K8 247 aa22.75■■□□□ 1.23
YBX3-201ENST00000228251 MROH5Q6ZUA9 1318 aa22.75■■□□□ 1.23
YBX3-201ENST00000228251 COL4A1P02462 1669 aa22.75■■□□□ 1.23
YBX3-201ENST00000228251 VPS72Q15906 364 aa22.74■■□□□ 1.23
YBX3-201ENST00000228251 E7EWF7 191 aa22.73■■□□□ 1.23
YBX3-201ENST00000228251 PIP4K2BP78356 416 aa22.73■■□□□ 1.23
YBX3-201ENST00000228251 FOXD4L6Q3SYB3 417 aaPredicted RBP22.73■■□□□ 1.23
YBX3-201ENST00000228251 FOXD4L3Q6VB84 417 aaPredicted RBP22.73■■□□□ 1.23
YBX3-201ENST00000228251 FBXL16Q8N461 479 aa22.73■■□□□ 1.23
YBX3-201ENST00000228251 HCLS1P14317 486 aaPredicted RBP22.73■■□□□ 1.23
YBX3-201ENST00000228251 PDCP20941 246 aa22.73■■□□□ 1.23
YBX3-201ENST00000228251 LRSAM1Q6UWE0 723 aa22.73■■□□□ 1.23
YBX3-201ENST00000228251 BTAF1O14981 1849 aa22.72■■□□□ 1.23
YBX3-201ENST00000228251 MYH15Q9Y2K3 1946 aa22.72■■□□□ 1.23
YBX3-201ENST00000228251 PUM3Q15397 648 aaKnown RBP22.72■■□□□ 1.23
YBX3-201ENST00000228251 LARP1BQ659C4 914 aaKnown RBP22.72■■□□□ 1.23
YBX3-201ENST00000228251 PUS7LQ9H0K6 701 aaKnown RBP22.72■■□□□ 1.23
YBX3-201ENST00000228251 NHSQ6T4R5 1651 aa22.72■■□□□ 1.23
YBX3-201ENST00000228251 PFKFB2O60825 505 aa22.71■■□□□ 1.23
YBX3-201ENST00000228251 ADD2P35612 726 aa22.71■■□□□ 1.23
YBX3-201ENST00000228251 CCDC102BQ68D86 513 aa22.71■■□□□ 1.23
YBX3-201ENST00000228251 TTLL5Q6EMB2 1281 aa22.71■■□□□ 1.23
YBX3-201ENST00000228251 SMARCC2Q8TAQ2 1214 aa22.71■■□□□ 1.23
YBX3-201ENST00000228251 LPIN2Q92539 896 aa22.71■■□□□ 1.23
YBX3-201ENST00000228251 PHKA1P46020 1223 aa22.71■■□□□ 1.23
YBX3-201ENST00000228251 CDC37L1Q7L3B6 337 aa22.71■■□□□ 1.23
YBX3-201ENST00000228251 FAM43AQ8N2R8 423 aa22.71■■□□□ 1.23
YBX3-201ENST00000228251 BRF1Q92994 677 aa22.71■■□□□ 1.23
YBX3-201ENST00000228251 COL24A1Q17RW2 1714 aa22.7■■□□□ 1.22
YBX3-201ENST00000228251 FAM98CQ17RN3 349 aaKnown RBP22.7■■□□□ 1.22
YBX3-201ENST00000228251 RBSNQ9H1K0 784 aa22.7■■□□□ 1.22
YBX3-201ENST00000228251 PIH1D3Q9NQM4 214 aaKnown RBP22.7■■□□□ 1.22
YBX3-201ENST00000228251 RGL2O15211 777 aa22.69■■□□□ 1.22
YBX3-201ENST00000228251 EVCP57679 992 aa22.69■■□□□ 1.22
YBX3-201ENST00000228251 UBE2HP62256 183 aa22.69■■□□□ 1.22
YBX3-201ENST00000228251 DNM1Q05193 864 aaKnown RBP22.69■■□□□ 1.22
YBX3-201ENST00000228251 STK3Q13188 491 aa22.69■■□□□ 1.22
YBX3-201ENST00000228251 LINC00116Q8NCU8 138 aa22.69■■□□□ 1.22
YBX3-201ENST00000228251 SEC31BQ9NQW1 1179 aa22.69■■□□□ 1.22
YBX3-201ENST00000228251 SYCE3A1L190 88 aa22.68■■□□□ 1.22
YBX3-201ENST00000228251 VPS37CA5D8V6 355 aaPredicted RBP22.68■■□□□ 1.22
YBX3-201ENST00000228251 UQCRFS1P1P0C7P4 283 aa22.68■■□□□ 1.22
YBX3-201ENST00000228251 NASPP49321 788 aaPredicted RBP22.68■■□□□ 1.22
YBX3-201ENST00000228251 SCRN1Q12765 414 aa22.68■■□□□ 1.22
YBX3-201ENST00000228251 TTF1Q15361 905 aaPredicted RBP22.68■■□□□ 1.22
YBX3-201ENST00000228251 CLEC4GQ6UXB4 293 aa22.68■■□□□ 1.22
YBX3-201ENST00000228251 FNBP4Q8N3X1 1017 aaPredicted RBP22.68■■□□□ 1.22
YBX3-201ENST00000228251 PPP1R9BQ96SB3 815 aa22.68■■□□□ 1.22
YBX3-201ENST00000228251 LLPHQ9BRT6 129 aaKnown RBP22.68■■□□□ 1.22
YBX3-201ENST00000228251 LRRC2Q9BYS8 371 aa22.68■■□□□ 1.22
YBX3-201ENST00000228251 CTNNA3Q9UI47 895 aa22.68■■□□□ 1.22
YBX3-201ENST00000228251 CNTNAP4Q9C0A0 1308 aa22.68■■□□□ 1.22
YBX3-201ENST00000228251 GPAA1O43292 621 aa22.68■■□□□ 1.22
YBX3-201ENST00000228251 JAK2O60674 1132 aa22.68■■□□□ 1.22
YBX3-201ENST00000228251 FGAP02671 866 aa22.68■■□□□ 1.22
YBX3-201ENST00000228251 UBE3CQ15386 1083 aa22.68■■□□□ 1.22
YBX3-201ENST00000228251 WASHC4Q2M389 1173 aa22.68■■□□□ 1.22
YBX3-201ENST00000228251 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.68■■□□□ 1.22
YBX3-201ENST00000228251 NIP7Q9Y221 180 aaKnown RBP eCLIP22.68■■□□□ 1.22
YBX3-201ENST00000228251 A0A0G2JS52 829 aa22.67■■□□□ 1.22
YBX3-201ENST00000228251 TCRBV5S4A2TA0A5A2 114 aa22.67■■□□□ 1.22
YBX3-201ENST00000228251 UBAP1LF5GYI3 381 aa22.67■■□□□ 1.22
YBX3-201ENST00000228251 ZSCAN25Q6NSZ9 544 aa22.67■■□□□ 1.22
YBX3-201ENST00000228251 CCDC152Q4G0S7 254 aa22.66■■□□□ 1.22
YBX3-201ENST00000228251 SYAP1Q96A49 352 aaPredicted RBP22.66■■□□□ 1.22
YBX3-201ENST00000228251 LY75O60449 1722 aa22.66■■□□□ 1.22
YBX3-201ENST00000228251 TAF1LQ8IZX4 1826 aa22.66■■□□□ 1.22
YBX3-201ENST00000228251 CTDNEP1O95476 244 aa22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms