RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 HRH4Q9H3N8 390 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 PIGMQ9H3S5 423 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 SDR39U1Q9NRG7 319 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-217ENST00000637988 CLCF1Q9UBD9 225 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 NKX1-2Q9UD57 310 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-217ENST00000637988 PITPNC1Q9UKF7 332 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 AVPR2P30518 371 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 POU4F3Q15319 338 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 FAM109BQ6ICB4 259 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-217ENST00000637988 ERGIC1Q969X5 290 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 KCNK17Q96T54 332 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 PLSCR3Q9NRY6 295 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 NOTOA8MTQ0 251 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 GSTZ1O43708 216 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-217ENST00000637988 SSSCA1O60232 199 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 SLC25A6P12236 298 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 GABRB3P28472 473 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 CNN1P51911 297 aaKnown RBP5.54□□□□□ -1.52
SCN1A-217ENST00000637988 GFERP55789 205 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 DGAT2L6Q6ZPD8 337 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 SLCO4C1Q6ZQN7 724 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 SHISA5Q8N114 240 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 NOXO1Q8NFA2 376 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 OR1F12Q8NHA8 337 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 RDH5Q92781 318 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 FAM3DQ96BQ1 224 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 RASD2Q96D21 266 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 MED20Q9H944 212 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 PRRT4C9JH25 899 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 SS18L1O75177 396 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-217ENST00000637988 FBXO24O75426 580 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 LYZL6O75951 148 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 HIST1H1EP10412 219 aaKnown RBP5.54□□□□□ -1.52
SCN1A-217ENST00000637988 FAM189BP81408 668 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 XKR7Q5GH72 579 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 SPANXN5Q5MJ07 72 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 MOB1BQ7L9L4 216 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 GDF7Q7Z4P5 450 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 PELI3Q8N2H9 469 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 ADGRG7Q96K78 797 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 GABRG3Q99928 467 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 CLN8Q9UBY8 286 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 ABCA7Q8IZY2 2146 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 PTGFRP43088 359 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 NKX2-1P43699 371 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-217ENST00000637988 ELLP55199 621 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-217ENST00000637988 KLRB1Q12918 225 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 DOC2BQ14184 412 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 EBLN2Q6P2I7 272 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 CCDC190Q86UF4 302 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 BATF2Q8N1L9 274 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 DTWD1Q8N5C7 304 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 TREX1Q9NSU2 369 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 DOCK6Q96HP0 2047 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 A0A0B4J293 547 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 THBS4P35443 961 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 PDLIM4P50479 330 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 FOXK2Q01167 660 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 EBPQ15125 230 aaKnown RBP5.54□□□□□ -1.52
SCN1A-217ENST00000637988 FOCADQ5VW36 1801 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 VSTM2AQ8TAG5 236 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 CLDN23Q96B33 292 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 FAM210AQ96ND0 272 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 OR51J1Q9H342 316 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 ZFP64Q9NPA5 681 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 DCAF16Q9NXF7 216 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 SPAARA0A1B0GVQ0 90 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 MYF5P13349 255 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 NPY1RP25929 384 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 ARRB2P32121 409 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 HOXD13P35453 343 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 CTU2Q2VPK5 515 aaKnown RBP5.53□□□□□ -1.52
SCN1A-217ENST00000637988 TRMT12Q53H54 448 aaKnown RBP5.53□□□□□ -1.52
SCN1A-217ENST00000637988 C1orf185Q5T7R7 199 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 LYG1Q8N1E2 194 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 GMPR2Q9P2T1 348 aaKnown RBP5.53□□□□□ -1.52
SCN1A-217ENST00000637988 A8MV72 311 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-217ENST00000637988 FABP7O15540 132 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 FAM106CPP0CH98 169 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 HLCSP50747 726 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 PPP2CBP62714 309 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 PPP2CAP67775 309 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 H3F3AP84243 136 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 PRDX4Q13162 271 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 ZNF141Q15928 474 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 TMEM97Q5BJF2 176 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 OR2B11Q5JQS5 317 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 OSR2Q8N2R0 312 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 EIF4E3Q8N5X7 224 aaKnown RBP5.53□□□□□ -1.52
SCN1A-217ENST00000637988 OR2T35Q8NGX2 323 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 HSD17B10Q99714 261 aaKnown RBP5.53□□□□□ -1.52
SCN1A-217ENST00000637988 ELOVL1Q9BW60 279 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 POFUT1Q9H488 388 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 ICAM5Q9UMF0 924 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 MOB4Q9Y3A3 225 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 RBBP6Q7Z6E9 1792 aaKnown RBP5.53□□□□□ -1.52
SCN1A-217ENST00000637988 MT-ND4LP03901 98 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 CRISP2P16562 243 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 CEACAM16Q2WEN9 425 aa5.53□□□□□ -1.52
SCN1A-217ENST00000637988 TSLPQ969D9 159 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms