RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 GABRA5P31644 462 aa13.44□□□□□ -0.26
CLN3-264ENST00000637985 SRP9P49458 86 aaKnown RBP13.44□□□□□ -0.26
CLN3-264ENST00000637985 TPTEP56180 551 aa13.44□□□□□ -0.26
CLN3-264ENST00000637985 TRAP1Q12931 704 aaKnown RBP13.44□□□□□ -0.26
CLN3-264ENST00000637985 MALLQ13021 153 aa13.44□□□□□ -0.26
CLN3-264ENST00000637985 GK3PQ14409 553 aa13.44□□□□□ -0.26
CLN3-264ENST00000637985 MICAQ29983 383 aa13.44□□□□□ -0.26
CLN3-264ENST00000637985 OR2T5Q6IEZ7 315 aa13.44□□□□□ -0.26
CLN3-264ENST00000637985 LYPD2Q6UXB3 125 aa13.44□□□□□ -0.26
CLN3-264ENST00000637985 LNX2Q8N448 690 aa13.44□□□□□ -0.26
CLN3-264ENST00000637985 PIP4P2Q8N4L2 257 aa13.44□□□□□ -0.26
CLN3-264ENST00000637985 AQP11Q8NBQ7 271 aa13.44□□□□□ -0.26
CLN3-264ENST00000637985 CCDC197Q8NCU1 140 aa13.44□□□□□ -0.26
CLN3-264ENST00000637985 PROKR2Q8NFJ6 384 aa13.44□□□□□ -0.26
CLN3-264ENST00000637985 OR2T29Q8NH02 315 aa13.44□□□□□ -0.26
CLN3-264ENST00000637985 SPTSSAQ969W0 71 aa13.44□□□□□ -0.26
CLN3-264ENST00000637985 MEGF10Q96KG7 1140 aa13.44□□□□□ -0.26
CLN3-264ENST00000637985 DGCR6LQ9BY27 220 aa13.44□□□□□ -0.26
CLN3-264ENST00000637985 C1orf21Q9H246 121 aa13.44□□□□□ -0.26
CLN3-264ENST00000637985 REEP1Q9H902 201 aa13.44□□□□□ -0.26
CLN3-264ENST00000637985 TBC1D23Q9NUY8 699 aa13.44□□□□□ -0.26
CLN3-264ENST00000637985 TMEM100Q9NV29 134 aa13.44□□□□□ -0.26
CLN3-264ENST00000637985 BAIAP2Q9UQB8 552 aa13.44□□□□□ -0.26
CLN3-264ENST00000637985 LCATP04180 440 aa13.43□□□□□ -0.26
CLN3-264ENST00000637985 PYCR1P32322 319 aa13.43□□□□□ -0.26
CLN3-264ENST00000637985 PSMB10P40306 273 aa13.43□□□□□ -0.26
CLN3-264ENST00000637985 EFNB2P52799 333 aa13.43□□□□□ -0.26
CLN3-264ENST00000637985 MS4A2Q01362 244 aa13.43□□□□□ -0.26
CLN3-264ENST00000637985 ZNF181Q2M3W8 571 aa13.43□□□□□ -0.26
CLN3-264ENST00000637985 CYB561A3Q8NBI2 242 aa13.43□□□□□ -0.26
CLN3-264ENST00000637985 SCCPDHQ8NBX0 429 aa13.43□□□□□ -0.26
CLN3-264ENST00000637985 SLC37A3Q8NCC5 494 aa13.43□□□□□ -0.26
CLN3-264ENST00000637985 OR8D4Q8NGM9 314 aa13.43□□□□□ -0.26
CLN3-264ENST00000637985 LHX4Q969G2 390 aa13.43□□□□□ -0.26
CLN3-264ENST00000637985 ASB9Q96DX5 294 aa13.43□□□□□ -0.26
CLN3-264ENST00000637985 MAP6Q96JE9 813 aa13.43□□□□□ -0.26
CLN3-264ENST00000637985 TSSK6Q9BXA6 273 aa13.43□□□□□ -0.26
CLN3-264ENST00000637985 SIRPDQ9H106 197 aa13.43□□□□□ -0.26
CLN3-264ENST00000637985 FOXJ3Q9UPW0 622 aa13.43□□□□□ -0.26
CLN3-264ENST00000637985 SIGLEC9Q9Y336 463 aa13.43□□□□□ -0.26
CLN3-264ENST00000637985 SAMHD1Q9Y3Z3 626 aaKnown RBP13.43□□□□□ -0.26
CLN3-264ENST00000637985 SACSQ9NZJ4 4579 aa13.43□□□□□ -0.26
CLN3-264ENST00000637985 TENM2Q9NT68 2774 aa13.43□□□□□ -0.26
CLN3-264ENST00000637985 RNASEK-C17orf49H0YIS7 233 aa13.42□□□□□ -0.26
CLN3-264ENST00000637985 MLNRO43193 412 aa13.42□□□□□ -0.26
CLN3-264ENST00000637985 T-ENOLP0DO92 83 aa13.42□□□□□ -0.26
CLN3-264ENST00000637985 RAP2AP10114 183 aa13.42□□□□□ -0.26
CLN3-264ENST00000637985 GK2Q14410 553 aaPredicted RBP13.42□□□□□ -0.26
CLN3-264ENST00000637985 FAM201AQ5SY85 155 aa13.42□□□□□ -0.26
CLN3-264ENST00000637985 METTL11BQ5VVY1 283 aa13.42□□□□□ -0.26
CLN3-264ENST00000637985 CD276Q5ZPR3 534 aa13.42□□□□□ -0.26
CLN3-264ENST00000637985 C11orf88Q6PI97 169 aa13.42□□□□□ -0.26
CLN3-264ENST00000637985 DCDC5Q6ZRR9 648 aa13.42□□□□□ -0.26
CLN3-264ENST00000637985 CELF2-AS1Q8N7Q2 184 aa13.42□□□□□ -0.26
CLN3-264ENST00000637985 BHLHE23Q8NDY6 225 aa13.42□□□□□ -0.26
CLN3-264ENST00000637985 OR2T33Q8NG76 320 aa13.42□□□□□ -0.26
CLN3-264ENST00000637985 OR4S1Q8NGB4 309 aa13.42□□□□□ -0.26
CLN3-264ENST00000637985 OR10AD1Q8NGE0 317 aa13.42□□□□□ -0.26
CLN3-264ENST00000637985 LRGUKQ96M69 825 aa13.42□□□□□ -0.26
CLN3-264ENST00000637985 WDR76Q9H967 626 aa13.42□□□□□ -0.26
CLN3-264ENST00000637985 ZNRD1Q9P1U0 126 aa13.42□□□□□ -0.26
CLN3-264ENST00000637985 U3KQV3 271 aa13.42□□□□□ -0.26
CLN3-264ENST00000637985 BTBD17A6NE02 478 aa13.41□□□□□ -0.26
CLN3-264ENST00000637985 LRRC30A6NM36 301 aa13.41□□□□□ -0.26
CLN3-264ENST00000637985 M0R135 149 aa13.41□□□□□ -0.26
CLN3-264ENST00000637985 FMO3P31513 532 aa13.41□□□□□ -0.26
CLN3-264ENST00000637985 NPY4RP50391 375 aa13.41□□□□□ -0.26
CLN3-264ENST00000637985 BLVRAP53004 296 aa13.41□□□□□ -0.26
CLN3-264ENST00000637985 SLC25A1P53007 311 aa13.41□□□□□ -0.26
CLN3-264ENST00000637985 PPP1R8Q12972 351 aaKnown RBP13.41□□□□□ -0.26
CLN3-264ENST00000637985 PCK2Q16822 640 aa13.41□□□□□ -0.26
CLN3-264ENST00000637985 DRAM2Q6UX65 266 aa13.41□□□□□ -0.26
CLN3-264ENST00000637985 CD300LDQ6UXZ3 194 aa13.41□□□□□ -0.26
CLN3-264ENST00000637985 PGAP1Q75T13 922 aa13.41□□□□□ -0.26
CLN3-264ENST00000637985 NAA40Q86UY6 237 aa13.41□□□□□ -0.26
CLN3-264ENST00000637985 C1orf87Q8N0U7 546 aa13.41□□□□□ -0.26
CLN3-264ENST00000637985 ZNRF4Q8WWF5 429 aa13.41□□□□□ -0.26
CLN3-264ENST00000637985 ERGIC1Q969X5 290 aa13.41□□□□□ -0.26
CLN3-264ENST00000637985 SLCO4A1Q96BD0 722 aa13.41□□□□□ -0.26
CLN3-264ENST00000637985 ZNF799Q96GE5 643 aa13.41□□□□□ -0.26
CLN3-264ENST00000637985 OCSTAMPQ9BR26 566 aa13.41□□□□□ -0.26
CLN3-264ENST00000637985 NMNAT2Q9BZQ4 307 aa13.41□□□□□ -0.26
CLN3-264ENST00000637985 SLC22A4Q9H015 551 aa13.41□□□□□ -0.26
CLN3-264ENST00000637985 VNN3Q9NY84 501 aa13.41□□□□□ -0.26
CLN3-264ENST00000637985 TAS2R1Q9NYW7 299 aa13.41□□□□□ -0.26
CLN3-264ENST00000637985 FAM96BQ9Y3D0 163 aa13.41□□□□□ -0.26
CLN3-264ENST00000637985 ANKRD61A6NGH8 418 aa13.4□□□□□ -0.26
CLN3-264ENST00000637985 TVP23AA6NH52 213 aa13.4□□□□□ -0.26
CLN3-264ENST00000637985 F5H5P2 479 aa13.4□□□□□ -0.26
CLN3-264ENST00000637985 IFNGP01579 166 aa13.4□□□□□ -0.26
CLN3-264ENST00000637985 HOXB6P17509 224 aaKnown RBP13.4□□□□□ -0.26
CLN3-264ENST00000637985 OTX1P32242 354 aaPredicted RBP13.4□□□□□ -0.26
CLN3-264ENST00000637985 GATA4P43694 442 aa13.4□□□□□ -0.26
CLN3-264ENST00000637985 ENTPD1P49961 510 aa13.4□□□□□ -0.26
CLN3-264ENST00000637985 CRMP1Q14194 572 aa13.4□□□□□ -0.26
CLN3-264ENST00000637985 DEFB121Q5J5C9 76 aa13.4□□□□□ -0.26
CLN3-264ENST00000637985 TEX30Q5JUR7 227 aa13.4□□□□□ -0.26
CLN3-264ENST00000637985 DCXRQ7Z4W1 244 aa13.4□□□□□ -0.26
CLN3-264ENST00000637985 LYG1Q8N1E2 194 aa13.4□□□□□ -0.26
CLN3-264ENST00000637985 OR51L1Q8NGJ5 315 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms