RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 TRBV11-1A0A0K0K1C0 115 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 FRG2CA6NGY1 282 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 NPIPA2E9PIF3 369 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 NPIPA3F8WFD2 350 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 BPNT1O95861 308 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 NQO2P16083 231 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 ZBTB25P24278 435 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 SLC37A1P57057 533 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 ZNF674Q2M3X9 581 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 ACTBL2Q562R1 376 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 RAET1LQ5VY80 246 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 KIAA0895LQ68EN5 471 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 FBXW12Q6X9E4 464 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 OR9K2Q8NGE7 335 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 ELSPBP1Q96BH3 223 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 RSRP1Q9BUV0 290 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 SLC5A7Q9GZV3 580 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 UBE2J1Q9Y385 318 aaPredicted RBP11.24□□□□□ -0.61
LIG1-221ENST00000613670 DENND4CQ5VZ89 1909 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 TLCD2A6NGC4 264 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 PLPP3O14495 311 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 CAPZBP47756 277 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 ZNF121P58317 390 aaPredicted RBP11.23□□□□□ -0.61
LIG1-221ENST00000613670 MICBQ29980 383 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 LINC00114Q6XXX2 140 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 PTPMT1Q8WUK0 201 aaPredicted RBP11.23□□□□□ -0.61
LIG1-221ENST00000613670 OR5AC2Q9NZP5 309 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 KLHL13Q9P2N7 655 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 CTSFQ9UBX1 484 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 COL4A6Q14031 1691 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 SPTY2D1-AS1A0A0U1RR47 76 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 LOC101059948A0A1B0GTJ6 334 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 G3V3Y1 287 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 RER1O15258 196 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 MBTPS2O43462 519 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 NXPH3O95157 252 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 ACTL6AO96019 429 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 IFNA2P01563 188 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 LCATP04180 440 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 JMJD7P0C870 316 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 ID4P47928 161 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 MTCP1P56278 107 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 CLDN17P56750 224 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 PHOSPHO2Q8TCD6 241 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 CHST11Q9NPF2 352 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 RNF222A6NCQ9 220 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 TTLL8A6PVC2 850 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 RAB27BO00194 218 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 EFSO43281 561 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 BGLAPP02818 100 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 GABRG2P18507 467 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 RFC3P40938 356 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 C17orf67Q0P5P2 114 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 FHL1Q13642 323 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 ZNF345Q14585 488 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 RHEBQ15382 184 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 SUMF2Q8NBJ7 301 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 TMEM104Q8NE00 496 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 OR5L1Q8NGL2 311 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 GPBAR1Q8TDU6 330 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 KIRREL1Q96J84 757 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 WWTR1Q9GZV5 400 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 FGF21Q9NSA1 209 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 MMACHCQ9Y4U1 282 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 PCDHGA1Q9Y5H4 931 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 HS3ST3A1Q9Y663 406 aa11.23□□□□□ -0.61
LIG1-221ENST00000613670 A0A0C4DFX4 3053 aa11.22□□□□□ -0.61
LIG1-221ENST00000613670 DUX1O43812 170 aa11.22□□□□□ -0.61
LIG1-221ENST00000613670 SLC25A4P12235 298 aa11.22□□□□□ -0.61
LIG1-221ENST00000613670 BCKDHBP21953 392 aa11.22□□□□□ -0.61
LIG1-221ENST00000613670 TAF9Q16594 264 aa11.22□□□□□ -0.61
LIG1-221ENST00000613670 DTWD2Q8NBA8 298 aa11.22□□□□□ -0.61
LIG1-221ENST00000613670 LRRC61Q9BV99 259 aa11.22□□□□□ -0.61
LIG1-221ENST00000613670 MUC1P15941 1255 aaPredicted RBP11.22□□□□□ -0.61
LIG1-221ENST00000613670 SRSF3P84103 164 aaKnown RBP11.22□□□□□ -0.61
LIG1-221ENST00000613670 FOXF1Q12946 379 aa11.22□□□□□ -0.61
LIG1-221ENST00000613670 PDZD11Q5EBL8 140 aa11.22□□□□□ -0.61
LIG1-221ENST00000613670 SOHLH1Q5JUK2 328 aa11.22□□□□□ -0.61
LIG1-221ENST00000613670 PLXDC1Q8IUK5 500 aa11.22□□□□□ -0.61
LIG1-221ENST00000613670 AMDHD2Q9Y303 409 aa11.22□□□□□ -0.61
LIG1-221ENST00000613670 AHCTF1Q8WYP5 2266 aa11.22□□□□□ -0.61
LIG1-221ENST00000613670 NPIPB9F8W1W9 429 aa11.22□□□□□ -0.61
LIG1-221ENST00000613670 RAD51DO75771 328 aa11.22□□□□□ -0.61
LIG1-221ENST00000613670 ARG1P05089 322 aa11.22□□□□□ -0.61
LIG1-221ENST00000613670 HIST1H1DP16402 221 aaKnown RBP11.22□□□□□ -0.61
LIG1-221ENST00000613670 HOXA1P49639 335 aaPredicted RBP11.22□□□□□ -0.61
LIG1-221ENST00000613670 FABP9Q0Z7S8 132 aa11.22□□□□□ -0.61
LIG1-221ENST00000613670 FZD2Q14332 565 aa11.22□□□□□ -0.61
LIG1-221ENST00000613670 FAM24BQ8N5W8 94 aa11.22□□□□□ -0.61
LIG1-221ENST00000613670 TMEM156Q8N614 296 aa11.22□□□□□ -0.61
LIG1-221ENST00000613670 LPAR3Q9UBY5 353 aa11.22□□□□□ -0.61
LIG1-221ENST00000613670 RP1L1Q8IWN7 2480 aaPredicted RBP11.22□□□□□ -0.61
LIG1-221ENST00000613670 UMAD1C9J7I0 102 aa11.21□□□□□ -0.61
LIG1-221ENST00000613670 ANGPTL7O43827 346 aa11.21□□□□□ -0.61
LIG1-221ENST00000613670 SFT2D2O95562 160 aa11.21□□□□□ -0.61
LIG1-221ENST00000613670 QDPRP09417 244 aa11.21□□□□□ -0.61
LIG1-221ENST00000613670 LAP3P28838 519 aa11.21□□□□□ -0.61
LIG1-221ENST00000613670 CD38P28907 300 aa11.21□□□□□ -0.61
LIG1-221ENST00000613670 CSNK1EP49674 416 aaKnown RBP11.21□□□□□ -0.61
LIG1-221ENST00000613670 HNRNPKP61978 463 aaKnown RBP eCLIP11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms