RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 ABHD6Q9BV23 337 aa8.72□□□□□ -1.01
LIG1-213ENST00000596672 SMURF1Q9HCE7 757 aa8.72□□□□□ -1.01
LIG1-213ENST00000596672 CMC2Q9NRP2 79 aa8.72□□□□□ -1.01
LIG1-213ENST00000596672 TBC1D23Q9NUY8 699 aa8.72□□□□□ -1.01
LIG1-213ENST00000596672 N6AMT1Q9Y5N5 214 aa8.72□□□□□ -1.01
LIG1-213ENST00000596672 AUP1Q9Y679 476 aa8.72□□□□□ -1.01
LIG1-213ENST00000596672 IGHV2-70DA0A0C4DH43 119 aa8.71□□□□□ -1.02
LIG1-213ENST00000596672 EI24O14681 340 aa8.71□□□□□ -1.02
LIG1-213ENST00000596672 SURF4O15260 269 aa8.71□□□□□ -1.02
LIG1-213ENST00000596672 FSTL3O95633 263 aa8.71□□□□□ -1.02
LIG1-213ENST00000596672 PLATP00750 562 aa8.71□□□□□ -1.02
LIG1-213ENST00000596672 TFF1P04155 84 aa8.71□□□□□ -1.02
LIG1-213ENST00000596672 ZNF823P16415 610 aa8.71□□□□□ -1.02
LIG1-213ENST00000596672 OPRL1P41146 370 aa8.71□□□□□ -1.02
LIG1-213ENST00000596672 SRP9P49458 86 aaKnown RBP8.71□□□□□ -1.02
LIG1-213ENST00000596672 HCCSP53701 268 aa8.71□□□□□ -1.02
LIG1-213ENST00000596672 FAM3AP98173 230 aa8.71□□□□□ -1.02
LIG1-213ENST00000596672 BLMHQ13867 455 aa8.71□□□□□ -1.02
LIG1-213ENST00000596672 TMEM236Q5W0B7 351 aa8.71□□□□□ -1.02
LIG1-213ENST00000596672 SFRP4Q6FHJ7 346 aaPredicted RBP8.71□□□□□ -1.02
LIG1-213ENST00000596672 SLC27A4Q6P1M0 643 aa8.71□□□□□ -1.02
LIG1-213ENST00000596672 DRAM2Q6UX65 266 aa8.71□□□□□ -1.02
LIG1-213ENST00000596672 DOK3Q7L591 496 aa8.71□□□□□ -1.02
LIG1-213ENST00000596672 DPY19L4Q7Z388 723 aa8.71□□□□□ -1.02
LIG1-213ENST00000596672 ZDHHC13Q8IUH4 622 aa8.71□□□□□ -1.02
LIG1-213ENST00000596672 GCSAMQ8N6F7 178 aa8.71□□□□□ -1.02
LIG1-213ENST00000596672 PACRGLQ8N7B6 248 aa8.71□□□□□ -1.02
LIG1-213ENST00000596672 OR52L1Q8NGH7 329 aa8.71□□□□□ -1.02
LIG1-213ENST00000596672 UPRTQ96BW1 309 aa8.71□□□□□ -1.02
LIG1-213ENST00000596672 LYZL4Q96KX0 146 aa8.71□□□□□ -1.02
LIG1-213ENST00000596672 KCNJ15Q99712 375 aa8.71□□□□□ -1.02
LIG1-213ENST00000596672 SSBP3Q9BWW4 388 aaPredicted RBP8.71□□□□□ -1.02
LIG1-213ENST00000596672 REEP1Q9H902 201 aa8.71□□□□□ -1.02
LIG1-213ENST00000596672 CENPMQ9NSP4 180 aa8.71□□□□□ -1.02
LIG1-213ENST00000596672 NUP50Q9UKX7 468 aa8.71□□□□□ -1.02
LIG1-213ENST00000596672 IGHV3OR15-7A0A075B7D8 119 aa8.7□□□□□ -1.02
LIG1-213ENST00000596672 KIR2DS1A0A191URI9 304 aa8.7□□□□□ -1.02
LIG1-213ENST00000596672 hCG_38984A0A1B0GV85 526 aa8.7□□□□□ -1.02
LIG1-213ENST00000596672 DNAJC9-AS1A6NH13 148 aa8.7□□□□□ -1.02
LIG1-213ENST00000596672 SELENOFO60613 162 aa8.7□□□□□ -1.02
LIG1-213ENST00000596672 LHBP01229 141 aa8.7□□□□□ -1.02
LIG1-213ENST00000596672 RPS2P15880 293 aaKnown RBP8.7□□□□□ -1.02
LIG1-213ENST00000596672 SLC2A5P22732 501 aa8.7□□□□□ -1.02
LIG1-213ENST00000596672 ACKR3P25106 362 aa8.7□□□□□ -1.02
LIG1-213ENST00000596672 FMO3P31513 532 aa8.7□□□□□ -1.02
LIG1-213ENST00000596672 GRK5P34947 590 aa8.7□□□□□ -1.02
LIG1-213ENST00000596672 CSNK2BP67870 215 aa8.7□□□□□ -1.02
LIG1-213ENST00000596672 GINS1Q14691 196 aa8.7□□□□□ -1.02
LIG1-213ENST00000596672 OR8G1Q15617 311 aa8.7□□□□□ -1.02
LIG1-213ENST00000596672 ESCO2Q56NI9 601 aa8.7□□□□□ -1.02
LIG1-213ENST00000596672 AWAT1Q58HT5 328 aa8.7□□□□□ -1.02
LIG1-213ENST00000596672 RPL13AP3Q6NVV1 102 aa8.7□□□□□ -1.02
LIG1-213ENST00000596672 SLC16A9Q7RTY1 509 aa8.7□□□□□ -1.02
LIG1-213ENST00000596672 MRPL21Q7Z2W9 205 aaKnown RBP8.7□□□□□ -1.02
LIG1-213ENST00000596672 FAM90A1Q86YD7 464 aa8.7□□□□□ -1.02
LIG1-213ENST00000596672 LINC00471Q8N535 108 aa8.7□□□□□ -1.02
LIG1-213ENST00000596672 CELF2-AS1Q8N7Q2 184 aa8.7□□□□□ -1.02
LIG1-213ENST00000596672 BOLLQ8N9W6 283 aaKnown RBP8.7□□□□□ -1.02
LIG1-213ENST00000596672 OR2T33Q8NG76 320 aa8.7□□□□□ -1.02
LIG1-213ENST00000596672 OR6K6Q8NGW6 343 aa8.7□□□□□ -1.02
LIG1-213ENST00000596672 GIPC3Q8TF64 312 aa8.7□□□□□ -1.02
LIG1-213ENST00000596672 RNF133Q8WVZ7 376 aa8.7□□□□□ -1.02
LIG1-213ENST00000596672 SPRYD4Q8WW59 207 aaPredicted RBP8.7□□□□□ -1.02
LIG1-213ENST00000596672 RAB40AQ8WXH6 277 aa8.7□□□□□ -1.02
LIG1-213ENST00000596672 ZMYND19Q96E35 227 aaPredicted RBP8.7□□□□□ -1.02
LIG1-213ENST00000596672 NEIL1Q96FI4 390 aaPredicted RBP8.7□□□□□ -1.02
LIG1-213ENST00000596672 COPS4Q9BT78 406 aa8.7□□□□□ -1.02
LIG1-213ENST00000596672 LRCH1Q9Y2L9 728 aa8.7□□□□□ -1.02
LIG1-213ENST00000596672 PRKDCP78527 4128 aaKnown RBP8.7□□□□□ -1.02
LIG1-213ENST00000596672 H0YJX3 145 aa8.69□□□□□ -1.02
LIG1-213ENST00000596672 IFNL4K9M1U5 179 aa8.69□□□□□ -1.02
LIG1-213ENST00000596672 M0R129 80 aa8.69□□□□□ -1.02
LIG1-213ENST00000596672 HAX1O00165 279 aa8.69□□□□□ -1.02
LIG1-213ENST00000596672 DLGAP1O14490 977 aa8.69□□□□□ -1.02
LIG1-213ENST00000596672 GRPP07492 148 aa8.69□□□□□ -1.02
LIG1-213ENST00000596672 SFTPBP07988 381 aa8.69□□□□□ -1.02
LIG1-213ENST00000596672 MMP9P14780 707 aa8.69□□□□□ -1.02
LIG1-213ENST00000596672 EPHA2P29317 976 aa8.69□□□□□ -1.02
LIG1-213ENST00000596672 HSPA13P48723 471 aa8.69□□□□□ -1.02
LIG1-213ENST00000596672 PITPNBP48739 271 aa8.69□□□□□ -1.02
LIG1-213ENST00000596672 CX3CR1P49238 355 aa8.69□□□□□ -1.02
LIG1-213ENST00000596672 ALDH3A2P51648 485 aa8.69□□□□□ -1.02
LIG1-213ENST00000596672 ZNF121P58317 390 aaPredicted RBP8.69□□□□□ -1.02
LIG1-213ENST00000596672 CDK5Q00535 292 aa8.69□□□□□ -1.02
LIG1-213ENST00000596672 EIF2B1Q14232 305 aaKnown RBP8.69□□□□□ -1.02
LIG1-213ENST00000596672 SLC9A3R2Q15599 337 aa8.69□□□□□ -1.02
LIG1-213ENST00000596672 ZIK1Q3SY52 487 aaPredicted RBP8.69□□□□□ -1.02
LIG1-213ENST00000596672 RUSC1-AS1Q66K80 236 aa8.69□□□□□ -1.02
LIG1-213ENST00000596672 PLBD1Q6P4A8 553 aa8.69□□□□□ -1.02
LIG1-213ENST00000596672 C12orf54Q6X4T0 127 aa8.69□□□□□ -1.02
LIG1-213ENST00000596672 BRD3OSQ6XYD6 125 aa8.69□□□□□ -1.02
LIG1-213ENST00000596672 FAM57BQ71RH2 274 aa8.69□□□□□ -1.02
LIG1-213ENST00000596672 BCDIN3DQ7Z5W3 292 aaKnown RBP8.69□□□□□ -1.02
LIG1-213ENST00000596672 ERI1Q8IV48 349 aaKnown RBP8.69□□□□□ -1.02
LIG1-213ENST00000596672 MUC20Q8N307 709 aaPredicted RBP8.69□□□□□ -1.02
LIG1-213ENST00000596672 BPIFB2Q8N4F0 458 aa8.69□□□□□ -1.02
LIG1-213ENST00000596672 OR6N2Q8NGY6 317 aa8.69□□□□□ -1.02
LIG1-213ENST00000596672 SPTSSAQ969W0 71 aa8.69□□□□□ -1.02
LIG1-213ENST00000596672 PPP1R14AQ96A00 147 aa8.69□□□□□ -1.02
LIG1-213ENST00000596672 TBX15Q96SF7 602 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms