RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 IMPAD1Q9NX62 359 aa9.38□□□□□ -0.91
VRK3-210ENST00000596121 MRPL15Q9P015 296 aaKnown RBP9.38□□□□□ -0.91
VRK3-210ENST00000596121 IKZF2Q9UKS7 526 aa9.38□□□□□ -0.91
VRK3-210ENST00000596121 NPTNQ9Y639 398 aa9.38□□□□□ -0.91
VRK3-210ENST00000596121 TMEM14AQ9Y6G1 99 aa9.38□□□□□ -0.91
VRK3-210ENST00000596121 ARHGAP32A7KAX9 2087 aa9.38□□□□□ -0.91
VRK3-210ENST00000596121 TMEM269A0A1B0GVZ9 245 aa9.37□□□□□ -0.91
VRK3-210ENST00000596121 ZNF670-ZNF695F2Z2N8 137 aa9.37□□□□□ -0.91
VRK3-210ENST00000596121 SLC16A6O15403 523 aa9.37□□□□□ -0.91
VRK3-210ENST00000596121 GMDSO60547 372 aa9.37□□□□□ -0.91
VRK3-210ENST00000596121 ZNF254O75437 659 aa9.37□□□□□ -0.91
VRK3-210ENST00000596121 CLIC3O95833 236 aa9.37□□□□□ -0.91
VRK3-210ENST00000596121 IGHV2-5P01817 119 aa9.37□□□□□ -0.91
VRK3-210ENST00000596121 TTRP02766 147 aa9.37□□□□□ -0.91
VRK3-210ENST00000596121 TNFRSF1AP19438 455 aa9.37□□□□□ -0.91
VRK3-210ENST00000596121 DCTDP32321 178 aa9.37□□□□□ -0.91
VRK3-210ENST00000596121 GATA4P43694 442 aa9.37□□□□□ -0.91
VRK3-210ENST00000596121 ELF3P78545 371 aaPredicted RBP9.37□□□□□ -0.91
VRK3-210ENST00000596121 TMED1Q13445 227 aa9.37□□□□□ -0.91
VRK3-210ENST00000596121 OR8G1Q15617 311 aa9.37□□□□□ -0.91
VRK3-210ENST00000596121 ZNF826PQ6ZT77 177 aa9.37□□□□□ -0.91
VRK3-210ENST00000596121 LRRC28Q86X40 367 aaPredicted RBP9.37□□□□□ -0.91
VRK3-210ENST00000596121 PRIMA1Q86XR5 153 aa9.37□□□□□ -0.91
VRK3-210ENST00000596121 LINC01356Q8N9X3 169 aa9.37□□□□□ -0.91
VRK3-210ENST00000596121 OR10H4Q8NGA5 316 aa9.37□□□□□ -0.91
VRK3-210ENST00000596121 RAB1CQ92928 201 aa9.37□□□□□ -0.91
VRK3-210ENST00000596121 RNFT2Q96EX2 444 aa9.37□□□□□ -0.91
VRK3-210ENST00000596121 MNTQ99583 582 aa9.37□□□□□ -0.91
VRK3-210ENST00000596121 ADAT1Q9BUB4 502 aaKnown RBP9.37□□□□□ -0.91
VRK3-210ENST00000596121 OPA3Q9H6K4 179 aa9.37□□□□□ -0.91
VRK3-210ENST00000596121 ZNF665Q9H7R5 613 aa9.37□□□□□ -0.91
VRK3-210ENST00000596121 SP140LQ9H930 580 aa9.37□□□□□ -0.91
VRK3-210ENST00000596121 LPAR2Q9HBW0 351 aa9.37□□□□□ -0.91
VRK3-210ENST00000596121 TMEM165Q9HC07 324 aa9.37□□□□□ -0.91
VRK3-210ENST00000596121 AMBNQ9NP70 447 aa9.37□□□□□ -0.91
VRK3-210ENST00000596121 UFSP2Q9NUQ7 469 aa9.37□□□□□ -0.91
VRK3-210ENST00000596121 NKX1-2Q9UD57 310 aaPredicted RBP9.37□□□□□ -0.91
VRK3-210ENST00000596121 CUBNO60494 3623 aa9.37□□□□□ -0.91
VRK3-210ENST00000596121 A0A0U1RQV5 110 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 A0A1B0GTI1 187 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 ERICH4A6NGS2 130 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 ACOD1A6NK06 481 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 C3orf80F5H4A9 247 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 LMX1BO60663 402 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 FAM20BO75063 409 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 WBP4O75554 376 aaKnown RBP9.36□□□□□ -0.91
VRK3-210ENST00000596121 OR2T7P0C7T2 308 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 DDOSTP39656 456 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 MTNR1AP48039 350 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 RIDAP52758 137 aaKnown RBP9.36□□□□□ -0.91
VRK3-210ENST00000596121 ISL1P61371 349 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 SEC61A1P61619 476 aaKnown RBP9.36□□□□□ -0.91
VRK3-210ENST00000596121 BTG1P62324 171 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 EGR3Q06889 387 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 SLC3A1Q07837 685 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 TP53I3Q53FA7 332 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 DMRTC1Q5HYR2 192 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 FAM166AQ6J272 317 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 IL17RELQ6ZVW7 336 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 KRT74Q7RTS7 529 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 CELF2-AS1Q8N7Q2 184 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 C19orf18Q8NEA5 215 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 OR2T27Q8NH04 317 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 OR51E1Q8TCB6 317 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 Q8TCH9 128 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 RFKQ969G6 155 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 LGALS12Q96DT0 336 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 TIMD4Q96H15 378 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 ZNF649Q9BS31 505 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 SLC22A4Q9H015 551 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 RGCCQ9H4X1 137 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 GPR84Q9NQS5 396 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 SMPD3Q9NY59 655 aaPredicted RBP9.36□□□□□ -0.91
VRK3-210ENST00000596121 NUFIP1Q9UHK0 495 aaKnown RBP9.36□□□□□ -0.91
VRK3-210ENST00000596121 SLC22A13Q9Y226 551 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 EXOGQ9Y2C4 368 aaKnown RBP9.36□□□□□ -0.91
VRK3-210ENST00000596121 R4GMQ9 66 aa9.36□□□□□ -0.91
VRK3-210ENST00000596121 ISPDA4D126 451 aa9.35□□□□□ -0.91
VRK3-210ENST00000596121 METTL15A6NJ78 407 aa9.35□□□□□ -0.91
VRK3-210ENST00000596121 ZNF850A8MQ14 1090 aa9.35□□□□□ -0.91
VRK3-210ENST00000596121 PHYHO14832 338 aa9.35□□□□□ -0.91
VRK3-210ENST00000596121 CASQ2O14958 399 aaPredicted RBP9.35□□□□□ -0.91
VRK3-210ENST00000596121 PLPP2O43688 288 aa9.35□□□□□ -0.91
VRK3-210ENST00000596121 RPP14O95059 124 aaKnown RBP9.35□□□□□ -0.91
VRK3-210ENST00000596121 ZFP36P26651 326 aaKnown RBP9.35□□□□□ -0.91
VRK3-210ENST00000596121 THBS2P35442 1172 aa9.35□□□□□ -0.91
VRK3-210ENST00000596121 PSMB10P40306 273 aa9.35□□□□□ -0.91
VRK3-210ENST00000596121 CSNK2BP67870 215 aa9.35□□□□□ -0.91
VRK3-210ENST00000596121 ADARB1P78563 741 aaKnown RBP9.35□□□□□ -0.91
VRK3-210ENST00000596121 ZNF91Q05481 1191 aa9.35□□□□□ -0.91
VRK3-210ENST00000596121 POU4F2Q12837 409 aa9.35□□□□□ -0.91
VRK3-210ENST00000596121 SMN1Q16637 294 aaKnown RBP9.35□□□□□ -0.91
VRK3-210ENST00000596121 ZNF181Q2M3W8 571 aa9.35□□□□□ -0.91
VRK3-210ENST00000596121 FAM120AOSQ5T036 256 aa9.35□□□□□ -0.91
VRK3-210ENST00000596121 OGFRL1Q5TC84 451 aaPredicted RBP9.35□□□□□ -0.91
VRK3-210ENST00000596121 LIPNQ5VXI9 398 aa9.35□□□□□ -0.91
VRK3-210ENST00000596121 MEDAGQ5VYS4 303 aa9.35□□□□□ -0.91
VRK3-210ENST00000596121 CATSPERDQ86XM0 798 aa9.35□□□□□ -0.91
VRK3-210ENST00000596121 ELMOD2Q8IZ81 293 aa9.35□□□□□ -0.91
VRK3-210ENST00000596121 PRSS35Q8N3Z0 413 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms