RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 C6orf52Q5T4I8 152 aa10.05□□□□□ -0.8
LIG3-213ENST00000590630 OGFRL1Q5TC84 451 aaPredicted RBP10.05□□□□□ -0.8
LIG3-213ENST00000590630 TTC23Q5W5X9 447 aa10.05□□□□□ -0.8
LIG3-213ENST00000590630 SSX6Q7RTT6 188 aa10.05□□□□□ -0.8
LIG3-213ENST00000590630 SPERTQ8NA61 448 aa10.05□□□□□ -0.8
LIG3-213ENST00000590630 PLPP7Q8NBV4 271 aa10.05□□□□□ -0.8
LIG3-213ENST00000590630 CLDND2Q8NHS1 167 aa10.05□□□□□ -0.8
LIG3-213ENST00000590630 ERGIC1Q969X5 290 aa10.05□□□□□ -0.8
LIG3-213ENST00000590630 RNFT2Q96EX2 444 aa10.05□□□□□ -0.8
LIG3-213ENST00000590630 TBX5Q99593 518 aa10.05□□□□□ -0.8
LIG3-213ENST00000590630 PBOV1Q9GZY1 135 aa10.05□□□□□ -0.8
LIG3-213ENST00000590630 VCXQ9H320 206 aa10.05□□□□□ -0.8
LIG3-213ENST00000590630 TREM2Q9NZC2 230 aa10.05□□□□□ -0.8
LIG3-213ENST00000590630 NUFIP1Q9UHK0 495 aaKnown RBP10.05□□□□□ -0.8
LIG3-213ENST00000590630 MRM2Q9UI43 246 aaKnown RBP10.05□□□□□ -0.8
LIG3-213ENST00000590630 PCDHGB1Q9Y5G3 927 aa10.05□□□□□ -0.8
LIG3-213ENST00000590630 R4GMQ9 66 aa10.05□□□□□ -0.8
LIG3-213ENST00000590630 SVEP1Q4LDE5 3571 aa10.05□□□□□ -0.8
LIG3-213ENST00000590630 DOCK11Q5JSL3 2073 aa10.05□□□□□ -0.8
LIG3-213ENST00000590630 WNK2Q9Y3S1 2297 aa10.04□□□□□ -0.8
LIG3-213ENST00000590630 LRRC30A6NM36 301 aa10.04□□□□□ -0.8
LIG3-213ENST00000590630 LOC110117498-PIK3R3F6TDL0 507 aa10.04□□□□□ -0.8
LIG3-213ENST00000590630 WNT9BO14905 357 aa10.04□□□□□ -0.8
LIG3-213ENST00000590630 SRSF10O75494 262 aaKnown RBP10.04□□□□□ -0.8
LIG3-213ENST00000590630 PTBP3O95758 552 aaKnown RBP10.04□□□□□ -0.8
LIG3-213ENST00000590630 IL2RGP31785 369 aa10.04□□□□□ -0.8
LIG3-213ENST00000590630 RIPPLY3P57055 190 aa10.04□□□□□ -0.8
LIG3-213ENST00000590630 MVKQ03426 396 aa10.04□□□□□ -0.8
LIG3-213ENST00000590630 ZNF91Q05481 1191 aa10.04□□□□□ -0.8
LIG3-213ENST00000590630 MAB21L1Q13394 359 aa10.04□□□□□ -0.8
LIG3-213ENST00000590630 ZNF684Q5T5D7 378 aa10.04□□□□□ -0.8
LIG3-213ENST00000590630 AVPI1Q5T686 147 aa10.04□□□□□ -0.8
LIG3-213ENST00000590630 BCL2L15Q5TBC7 163 aa10.04□□□□□ -0.8
LIG3-213ENST00000590630 PLEKHG7Q6ZR37 379 aa10.04□□□□□ -0.8
LIG3-213ENST00000590630 C1orf87Q8N0U7 546 aa10.04□□□□□ -0.8
LIG3-213ENST00000590630 YIPF7Q8N8F6 280 aa10.04□□□□□ -0.8
LIG3-213ENST00000590630 RAB39BQ96DA2 213 aa10.04□□□□□ -0.8
LIG3-213ENST00000590630 MSI2Q96DH6 328 aaKnown RBP10.04□□□□□ -0.8
LIG3-213ENST00000590630 C1orf159Q96HA4 380 aa10.04□□□□□ -0.8
LIG3-213ENST00000590630 LYZL4Q96KX0 146 aa10.04□□□□□ -0.8
LIG3-213ENST00000590630 MYCBPQ99417 103 aaPredicted RBP10.04□□□□□ -0.8
LIG3-213ENST00000590630 PAPOLGQ9BWT3 736 aaKnown RBP10.04□□□□□ -0.8
LIG3-213ENST00000590630 NARFLQ9H6Q4 476 aa10.04□□□□□ -0.8
LIG3-213ENST00000590630 ABCB9Q9NP78 766 aa10.04□□□□□ -0.8
LIG3-213ENST00000590630 C14orf119Q9NWQ9 140 aa10.04□□□□□ -0.8
LIG3-213ENST00000590630 SNX5Q9Y5X3 404 aa10.04□□□□□ -0.8
LIG3-213ENST00000590630 NPTNQ9Y639 398 aa10.04□□□□□ -0.8
LIG3-213ENST00000590630 LOC100289279A0A1B0GTE1 492 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 ISPDA4D126 451 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 METTL15A6NJ78 407 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 A8MV72 311 aaPredicted RBP10.03□□□□□ -0.8
LIG3-213ENST00000590630 B4DSR2 109 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 TMEM178BH3BS89 294 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 J3QRE1 110 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 MAGEB4O15481 346 aaPredicted RBP10.03□□□□□ -0.8
LIG3-213ENST00000590630 PNPP00491 289 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 IGLV3-1P01715 115 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 IGHV2-70P01814 119 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 TTRP02766 147 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 DBTP11182 482 aaKnown RBP10.03□□□□□ -0.8
LIG3-213ENST00000590630 ATP6V1B1P15313 513 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 ZNF16P17020 682 aaPredicted RBP10.03□□□□□ -0.8
LIG3-213ENST00000590630 ACKR3P25106 362 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 GNALP38405 381 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 MAP2K3P46734 347 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 CDH15P55291 814 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 LMO4P61968 165 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 BTG1P62324 171 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 MFGE8Q08431 387 aaPredicted RBP10.03□□□□□ -0.8
LIG3-213ENST00000590630 RAB40BQ12829 278 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 IL18R1Q13478 541 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 ZNF691Q5VV52 312 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 LIPNQ5VXI9 398 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 FAM166AQ6J272 317 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 FAM220AQ7Z4H9 259 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 KCTD20Q7Z5Y7 419 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 MOGAT3Q86VF5 341 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 COMMD2Q86X83 199 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 ELMOD2Q8IZ81 293 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 DHRSXQ8N5I4 330 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 ACBD7Q8N6N7 88 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 LINC01356Q8N9X3 169 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 SETD9Q8NE22 299 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 OR8S1Q8NH09 359 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 OR51E1Q8TCB6 317 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 Q8TCH9 128 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 CYGBQ8WWM9 190 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 MRPL48Q96GC5 212 aaKnown RBP10.03□□□□□ -0.8
LIG3-213ENST00000590630 SIGLEC11Q96RL6 698 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 GAL3ST1Q99999 423 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 SOX7Q9BT81 388 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 FN3KRPQ9HA64 309 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 G6PC2Q9NQR9 355 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 GPR84Q9NQS5 396 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 YAE1D1Q9NRH1 226 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 DCAF16Q9NXF7 216 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 AASSQ9UDR5 926 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 GTF2A1LQ9UNN4 478 aa10.03□□□□□ -0.8
LIG3-213ENST00000590630 EXOGQ9Y2C4 368 aaKnown RBP10.03□□□□□ -0.8
LIG3-213ENST00000590630 RPL36Q9Y3U8 105 aaKnown RBP10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms