RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 AMER3Q8N944 861 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 TMEM229BQ8NBD8 167 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 OR1S2Q8NGQ3 325 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 OR13C2Q8NGS9 318 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 THAP6Q8TBB0 222 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 NANPQ8TBE9 248 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 STK35Q8TDR2 534 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 RXFP4Q8TDU9 374 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 GPR148Q8TDV2 347 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 RNF141Q8WVD5 230 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 NUDCD2Q8WVJ2 157 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 TMEM239Q8WW34 195 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 PMM1Q92871 262 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 CDS1Q92903 461 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 RNASE6Q93091 150 aaKnown RBP3.67□□□□□ -1.82
LIG3-211ENST00000588713 RAD51AP1Q96B01 352 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 C8orf44Q96CB5 159 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 MALSU1Q96EH3 234 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 DTD2Q96FN9 168 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 MNTQ99583 582 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 TEAD3Q99594 435 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 NRIP2Q9BQI9 281 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 CRB3Q9BUF7 120 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 RIOK2Q9BVS4 552 aaKnown RBP3.67□□□□□ -1.82
LIG3-211ENST00000588713 ZNF471Q9BX82 626 aaPredicted RBP3.67□□□□□ -1.82
LIG3-211ENST00000588713 HCAR1Q9BXC0 346 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 RAB11FIP5Q9BXF6 653 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 ACTRT3Q9BYD9 372 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 ZNF350Q9GZX5 532 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 SLCO5A1Q9H2Y9 848 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 OPA3Q9H6K4 179 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 EXO5Q9H790 373 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 MED20Q9H944 212 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 UCK1Q9HA47 277 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 TMEM27Q9HBJ8 222 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 NOX4Q9NPH5 578 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 POLE3Q9NRF9 147 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 GSN-AS1Q9NRJ2 163 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 SMCO4Q9NRQ5 59 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 MRPL15Q9P015 296 aaKnown RBP3.67□□□□□ -1.82
LIG3-211ENST00000588713 KLK11Q9UBX7 282 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 CD84Q9UIB8 345 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 SERTAD3Q9UJW9 196 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 SLC7A7Q9UM01 511 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 SIGLEC7Q9Y286 467 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 GPR55Q9Y2T6 319 aaPredicted RBP3.67□□□□□ -1.82
LIG3-211ENST00000588713 MED31Q9Y3C7 131 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 DMRT1Q9Y5R6 373 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 KPTNQ9Y664 436 aa3.67□□□□□ -1.82
LIG3-211ENST00000588713 CR1P17927 2039 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 DOCK10Q96BY6 2186 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 TRBV6-7A0A0A0MS04 114 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 TRBV5-7A0A0A0MS05 114 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 MEX3AA1L020 520 aaKnown RBP3.66□□□□□ -1.82
LIG3-211ENST00000588713 TMEM89A2RUT3 159 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 OR6C74A6NCV1 312 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 METTL21EPA6NDL7 271 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 OR5H14A6NHG9 310 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 OR52A4PA6NMU1 304 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 ZNF729A6NN14 1252 aaPredicted RBP3.66□□□□□ -1.82
LIG3-211ENST00000588713 FAM157AC9JC47 383 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 NPIPA2E9PIF3 369 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 NPIPB9F8W1W9 429 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 NPIPA3F8WFD2 350 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 RTCAO00442 366 aaKnown RBP3.66□□□□□ -1.82
LIG3-211ENST00000588713 FRS3O43559 492 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 GOSR1O95249 250 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 PPP1R3DO95685 299 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 AIFM1O95831 613 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 ACTL6AO96019 429 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 CD74P04233 296 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 CRYBA1P05813 215 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 GLAP06280 429 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 DBIP07108 87 aaKnown RBP3.66□□□□□ -1.82
LIG3-211ENST00000588713 ANXA2P07355 339 aaKnown RBP3.66□□□□□ -1.82
LIG3-211ENST00000588713 GUSBP08236 651 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 CD14P08571 375 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 CD63P08962 238 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 OR4E1P0C645 316 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 GLI4P10075 376 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 CD79AP11912 226 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 GTF2F2P13984 249 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 RCC1P18754 421 aaPredicted RBP3.66□□□□□ -1.82
LIG3-211ENST00000588713 SRMP19623 302 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 CSNK2A2P19784 350 aaPredicted RBP3.66□□□□□ -1.82
LIG3-211ENST00000588713 TBPP20226 339 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 MAKP20794 623 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 HNF1AP20823 631 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 ACHEP22303 614 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 ABCD3P28288 659 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 CD34P28906 385 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 MAP3K8P41279 467 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 MC3RP41968 323 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 PTGFRP43088 359 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 SLC6A9P48067 706 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 NPBWR1P48145 328 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 ASCL1P50553 236 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 PRKXP51817 358 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 EFNA3P52797 238 aa3.66□□□□□ -1.82
LIG3-211ENST00000588713 CAPZA1P52907 286 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms