RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 TRIM61Q5EBN2 209 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 SLC25A42Q86VD7 318 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 COMMD7Q86VX2 200 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 THNSL2Q86YJ6 484 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 CCDC28AQ8IWP9 274 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 TMEM123Q8N131 208 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 OR9K2Q8NGE7 335 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 KCNG3Q8TAE7 436 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 SSC4DQ8WTU2 575 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 MRGPRFQ96AM1 343 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 JSRP1Q96MG2 331 aaPredicted RBP8.88□□□□□ -0.99
VPS53-220ENST00000576149 NAA11Q9BSU3 229 aaPredicted RBP8.88□□□□□ -0.99
VPS53-220ENST00000576149 HPF1Q9NWY4 346 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 KCNN3Q9UGI6 736 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 DKKL1Q9UK85 242 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 KCNK7Q9Y2U2 307 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 IGKV1-9A0A0C4DH69 117 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 RFPL4AA6NLU0 287 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 NPIPA2E9PIF3 369 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 RFPL4AL1F8VTS6 287 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 NPIPA3F8WFD2 350 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 CNOT4O95628 575 aaKnown RBP8.88□□□□□ -0.99
VPS53-220ENST00000576149 WDPCPO95876 746 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 CASRP41180 1078 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 FOLR3P41439 243 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 OR3A4PP47883 348 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 CSNK2A1P68400 391 aaPredicted RBP8.88□□□□□ -0.99
VPS53-220ENST00000576149 SORDQ00796 357 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 SRSF4Q08170 494 aaKnown RBP8.88□□□□□ -0.99
VPS53-220ENST00000576149 SFRP5Q5T4F7 317 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 C17orf107Q6ZR85 190 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 ZDHHC22Q8N966 263 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 TMEM104Q8NE00 496 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 GJC3Q8NFK1 279 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 STEAP2Q8NFT2 490 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 NABP1Q96AH0 204 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 ZC3H10Q96K80 434 aaKnown RBP8.88□□□□□ -0.99
VPS53-220ENST00000576149 GUCD1Q96NT3 240 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 IFT46Q9NQC8 304 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 SLC39A1Q9NY26 324 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 KIF25Q9UIL4 384 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 FBXO4Q9UKT5 387 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 PLEKHA6Q9Y2H5 1048 aa8.88□□□□□ -0.99
VPS53-220ENST00000576149 EML6Q6ZMW3 1958 aa8.87□□□□□ -0.99
VPS53-220ENST00000576149 C5orf63A6NC05 138 aa8.87□□□□□ -0.99
VPS53-220ENST00000576149 SHOXO15266 292 aa8.87□□□□□ -0.99
VPS53-220ENST00000576149 CDC14BO60729 498 aa8.87□□□□□ -0.99
VPS53-220ENST00000576149 RP2O75695 350 aa8.87□□□□□ -0.99
VPS53-220ENST00000576149 CBR3O75828 277 aa8.87□□□□□ -0.99
VPS53-220ENST00000576149 CD8AP01732 235 aa8.87□□□□□ -0.99
VPS53-220ENST00000576149 PDGFAP04085 211 aa8.87□□□□□ -0.99
VPS53-220ENST00000576149 HCKP08631 526 aa8.87□□□□□ -0.99
VPS53-220ENST00000576149 GSTP1P09211 210 aaKnown RBP8.87□□□□□ -0.99
VPS53-220ENST00000576149 RPA2P15927 270 aa8.87□□□□□ -0.99
VPS53-220ENST00000576149 PPP3CBP16298 524 aa8.87□□□□□ -0.99
VPS53-220ENST00000576149 TBPP20226 339 aa8.87□□□□□ -0.99
VPS53-220ENST00000576149 ZBTB25P24278 435 aa8.87□□□□□ -0.99
VPS53-220ENST00000576149 HRH1P35367 487 aa8.87□□□□□ -0.99
VPS53-220ENST00000576149 CD96P40200 585 aa8.87□□□□□ -0.99
VPS53-220ENST00000576149 HIST1H3AP68431 136 aa8.87□□□□□ -0.99
VPS53-220ENST00000576149 GFOD2Q3B7J2 385 aa8.87□□□□□ -0.99
VPS53-220ENST00000576149 PLAC9Q5JTB6 97 aa8.87□□□□□ -0.99
VPS53-220ENST00000576149 HIST2H3PS2Q5TEC6 136 aa8.87□□□□□ -0.99
VPS53-220ENST00000576149 ZNF468Q5VIY5 522 aaPredicted RBP8.87□□□□□ -0.99
VPS53-220ENST00000576149 HIST2H3AQ71DI3 136 aa8.87□□□□□ -0.99
VPS53-220ENST00000576149 RTN4RL2Q86UN3 420 aa8.87□□□□□ -0.99
VPS53-220ENST00000576149 NAA40Q86UY6 237 aa8.87□□□□□ -0.99
VPS53-220ENST00000576149 OR5M8Q8NGP6 311 aa8.87□□□□□ -0.99
VPS53-220ENST00000576149 PGAM5Q96HS1 289 aa8.87□□□□□ -0.99
VPS53-220ENST00000576149 TMEM41AQ96HV5 264 aa8.87□□□□□ -0.99
VPS53-220ENST00000576149 LYZL4Q96KX0 146 aa8.87□□□□□ -0.99
VPS53-220ENST00000576149 ARL6Q9H0F7 186 aa8.87□□□□□ -0.99
VPS53-220ENST00000576149 TRAV14DV4A0A0A6YYC5 116 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 A0A0J9YW62 118 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 SOCS1O15524 211 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 DHHO43323 396 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 STK17BO94768 372 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 MPIG6BO95866 241 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 HLA-AP01891 365 aaKnown RBP8.86□□□□□ -0.99
VPS53-220ENST00000576149 CD34P28906 385 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 SUCLG1P53597 346 aaKnown RBP8.86□□□□□ -0.99
VPS53-220ENST00000576149 EIF3IQ13347 325 aaKnown RBP8.86□□□□□ -0.99
VPS53-220ENST00000576149 RSPO1Q2MKA7 263 aaPredicted RBP8.86□□□□□ -0.99
VPS53-220ENST00000576149 LPCAT3Q6P1A2 487 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 SLC23A3Q6PIS1 610 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 LYG2Q86SG7 212 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 NAXDQ8IW45 347 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 ZIC4Q8N9L1 334 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 NAXEQ8NCW5 288 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 RAB3CQ96E17 227 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 SGCZQ96LD1 299 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 PIGQQ9BRB3 760 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 TMEM59Q9BXS4 323 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 PPP1R14DQ9NXH3 145 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 FOXD3Q9UJU5 478 aaPredicted RBP8.86□□□□□ -0.99
VPS53-220ENST00000576149 ANAPC10Q9UM13 185 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 MED12Q93074 2177 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 A0A0U1RQV5 110 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 A0A1W2PP11 408 aa8.86□□□□□ -0.99
VPS53-220ENST00000576149 OR5H15A6NDH6 313 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms