RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 PDCD1LG2Q9BQ51 273 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 SLC30A2Q9BRI3 323 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 OR10A2Q9H208 303 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 ZNF696Q9H7X3 374 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 MOB1AQ9H8S9 216 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 ACOT13Q9NPJ3 140 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 ZNF701Q9NV72 531 aaPredicted RBP7.91□□□□□ -1.14
VPS35-211ENST00000569950 LAMP3Q9UQV4 416 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 PLEKHA6Q9Y2H5 1048 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 SPEF1Q9Y4P9 236 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 N6AMT1Q9Y5N5 214 aa7.91□□□□□ -1.14
VPS35-211ENST00000569950 YLPM1P49750 1951 aaKnown RBP7.91□□□□□ -1.14
VPS35-211ENST00000569950 LOC107986453A0A1B0GWG9 222 aa7.9□□□□□ -1.14
VPS35-211ENST00000569950 H0YL77 283 aa7.9□□□□□ -1.14
VPS35-211ENST00000569950 H7C417 338 aa7.9□□□□□ -1.14
VPS35-211ENST00000569950 TBX1O43435 398 aa7.9□□□□□ -1.14
VPS35-211ENST00000569950 MRPS14O60783 128 aaKnown RBP7.9□□□□□ -1.14
VPS35-211ENST00000569950 TACSTD2P09758 323 aa7.9□□□□□ -1.14
VPS35-211ENST00000569950 NAT2P11245 290 aa7.9□□□□□ -1.14
VPS35-211ENST00000569950 MYL12AP19105 171 aa7.9□□□□□ -1.14
VPS35-211ENST00000569950 CDKN1AP38936 164 aa7.9□□□□□ -1.14
VPS35-211ENST00000569950 CHN2P52757 468 aa7.9□□□□□ -1.14
VPS35-211ENST00000569950 GP2P55259 537 aaKnown RBP7.9□□□□□ -1.14
VPS35-211ENST00000569950 SSX1Q16384 188 aa7.9□□□□□ -1.14
VPS35-211ENST00000569950 CCDC58Q4VC31 144 aa7.9□□□□□ -1.14
VPS35-211ENST00000569950 UBE2UQ5VVX9 321 aa7.9□□□□□ -1.14
VPS35-211ENST00000569950 ZNF773Q6PK81 442 aa7.9□□□□□ -1.14
VPS35-211ENST00000569950 ARL9Q6T311 187 aa7.9□□□□□ -1.14
VPS35-211ENST00000569950 DNM1P46Q6ZS02 220 aa7.9□□□□□ -1.14
VPS35-211ENST00000569950 PGAP1Q75T13 922 aa7.9□□□□□ -1.14
VPS35-211ENST00000569950 WDR86Q86TI4 376 aa7.9□□□□□ -1.14
VPS35-211ENST00000569950 TGIF2LYQ8IUE0 185 aa7.9□□□□□ -1.14
VPS35-211ENST00000569950 FBXL14Q8N1E6 418 aa7.9□□□□□ -1.14
VPS35-211ENST00000569950 OR8G5Q8NG78 346 aa7.9□□□□□ -1.14
VPS35-211ENST00000569950 OR13C5Q8NGS8 318 aa7.9□□□□□ -1.14
VPS35-211ENST00000569950 COG8Q96MW5 612 aa7.9□□□□□ -1.14
VPS35-211ENST00000569950 SORCS2Q96PQ0 1159 aa7.9□□□□□ -1.14
VPS35-211ENST00000569950 RGCCQ9H4X1 137 aa7.9□□□□□ -1.14
VPS35-211ENST00000569950 MSL2Q9HCI7 577 aa7.9□□□□□ -1.14
VPS35-211ENST00000569950 TAAR3PQ9P1P4 343 aa7.9□□□□□ -1.14
VPS35-211ENST00000569950 DUSP13Q9UII6 198 aa7.9□□□□□ -1.14
VPS35-211ENST00000569950 SF3B6Q9Y3B4 125 aaKnown RBP7.9□□□□□ -1.14
VPS35-211ENST00000569950 RHBDD3Q9Y3P4 386 aa7.9□□□□□ -1.14
VPS35-211ENST00000569950 TLN2Q9Y4G6 2542 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 TRBV5-5A0A0J9YX44 114 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 H3BSH0 61 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 PLPP2O43688 288 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 SC5DO75845 299 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 LY6HO94772 140 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 PTBP3O95758 552 aaKnown RBP7.89□□□□□ -1.15
VPS35-211ENST00000569950 IGHV1-46P01743 117 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 IGHV4-39P01824 125 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 RAF1P04049 648 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 CD1AP06126 327 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 PPOXP50336 477 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 BDH1Q02338 343 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 TPBGQ13641 420 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 INSL4Q14641 139 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 SPHARQ15513 63 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 TIGD6Q17RP2 521 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 ODF4Q2M2E3 257 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 GFOD2Q3B7J2 385 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 AGAP6Q5VW22 663 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 RPL22L1Q6P5R6 122 aaKnown RBP7.89□□□□□ -1.15
VPS35-211ENST00000569950 TMPRSS11AQ6ZMR5 421 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 MRPL21Q7Z2W9 205 aaKnown RBP7.89□□□□□ -1.15
VPS35-211ENST00000569950 RNF144BQ7Z419 303 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 FAM220AQ7Z4H9 259 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 OR5AS1Q8N127 324 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 BHLHE23Q8NDY6 225 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 OR5L1Q8NGL2 311 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 HPSE2Q8WWQ2 592 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 DVL3Q92997 716 aaPredicted RBP7.89□□□□□ -1.15
VPS35-211ENST00000569950 MBD6Q96DN6 1003 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 SMIM19Q96E16 107 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 ADAT3Q96EY9 351 aaPredicted RBP7.89□□□□□ -1.15
VPS35-211ENST00000569950 FAM71F1Q96KD3 344 aaPredicted RBP7.89□□□□□ -1.15
VPS35-211ENST00000569950 MND1Q9BWT6 205 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 CACNG6Q9BXT2 260 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 ZNF391Q9UJN7 358 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 BLOC1S6Q9UL45 172 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 CR1P17927 2039 aa7.89□□□□□ -1.15
VPS35-211ENST00000569950 IGKV1-9A0A0C4DH69 117 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 LOC100289279A0A1B0GTE1 492 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 A6NIN4 97 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 DHRS7CA6NNS2 312 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 C17orf100A8MU93 164 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 M0R233 179 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 MYL12BO14950 172 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 PIN1P1O15428 100 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 DHRS3O75911 302 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 INMTO95050 263 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 CST4P01036 141 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 HPXP02790 462 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 HLA-DPB1P04440 258 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 CD55P08174 381 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 UBCP0CG48 685 aaKnown RBP7.88□□□□□ -1.15
VPS35-211ENST00000569950 SELEP16581 610 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 FAHP16930 419 aa7.88□□□□□ -1.15
VPS35-211ENST00000569950 ACHEP22303 614 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms