RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 hCG_38984A0A1B0GV85 526 aa9□□□□□ -0.97
VPS39-208ENST00000564994 TCRBV3S1A0A5B6 114 aa9□□□□□ -0.97
VPS39-208ENST00000564994 DNAJC9-AS1A6NH13 148 aa9□□□□□ -0.97
VPS39-208ENST00000564994 C3orf80F5H4A9 247 aa9□□□□□ -0.97
VPS39-208ENST00000564994 LGALS8O00214 317 aa9□□□□□ -0.97
VPS39-208ENST00000564994 DYNC1I1O14576 645 aa9□□□□□ -0.97
VPS39-208ENST00000564994 GNGT2O14610 69 aa9□□□□□ -0.97
VPS39-208ENST00000564994 PHYHO14832 338 aa9□□□□□ -0.97
VPS39-208ENST00000564994 SELENOFO60613 162 aa9□□□□□ -0.97
VPS39-208ENST00000564994 PLATP00750 562 aa9□□□□□ -0.97
VPS39-208ENST00000564994 OSMP13725 252 aa9□□□□□ -0.97
VPS39-208ENST00000564994 EGR1P18146 543 aa9□□□□□ -0.97
VPS39-208ENST00000564994 HSD11B1P28845 292 aa9□□□□□ -0.97
VPS39-208ENST00000564994 SLC15A1P46059 708 aa9□□□□□ -0.97
VPS39-208ENST00000564994 CDK5Q00535 292 aa9□□□□□ -0.97
VPS39-208ENST00000564994 C9orf139Q6ZV77 190 aa9□□□□□ -0.97
VPS39-208ENST00000564994 C11orf53Q8IXP5 236 aa9□□□□□ -0.97
VPS39-208ENST00000564994 SPERTQ8NA61 448 aa9□□□□□ -0.97
VPS39-208ENST00000564994 BBS1Q8NFJ9 593 aa9□□□□□ -0.97
VPS39-208ENST00000564994 ZMYND19Q96E35 227 aaPredicted RBP9□□□□□ -0.97
VPS39-208ENST00000564994 REEP6Q96HR9 211 aa9□□□□□ -0.97
VPS39-208ENST00000564994 MS4A7Q9GZW8 240 aaPredicted RBP9□□□□□ -0.97
VPS39-208ENST00000564994 SMURF1Q9HCE7 757 aa9□□□□□ -0.97
VPS39-208ENST00000564994 BRD7Q9NPI1 651 aa9□□□□□ -0.97
VPS39-208ENST00000564994 KLHDC2Q9Y2U9 406 aa9□□□□□ -0.97
VPS39-208ENST00000564994 MDFIC2A0A1B0GVS7 189 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 OOEPA6NGQ2 149 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 A6NLC8 198 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 ANKRD30BLA7E2S9 258 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 PRR23D1E9PI22 279 aaPredicted RBP8.99□□□□□ -0.97
VPS39-208ENST00000564994 GYG2O15488 501 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 FKBP6O75344 327 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 E2F6O75461 281 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 LHBP01229 141 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 GYPAP02724 150 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 H2BFMP0C1H6 154 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 PRR23D2P0DMB1 279 aaPredicted RBP8.99□□□□□ -0.97
VPS39-208ENST00000564994 PRTN3P24158 256 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 DDOSTP39656 456 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 FGF12P61328 243 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 ELF3P78545 371 aaPredicted RBP8.99□□□□□ -0.97
VPS39-208ENST00000564994 CBX1P83916 185 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 POU4F2Q12837 409 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 BAMBIQ13145 260 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 FLOT2Q14254 428 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 OR8B8Q15620 311 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 TIGD6Q17RP2 521 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 AWAT1Q58HT5 328 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 TMEM236Q5W0B7 351 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 RBMS3Q6XE24 437 aaKnown RBP8.99□□□□□ -0.97
VPS39-208ENST00000564994 RHOUQ7L0Q8 258 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 SHFQ7M4L6 423 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 SPATA24Q86W54 205 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 FAM90A1Q86YD7 464 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 CPOQ8IVL8 374 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 PAPD5Q8NDF8 572 aaKnown RBP8.99□□□□□ -0.97
VPS39-208ENST00000564994 OTOSQ8NHW6 89 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 BCAS4Q8TDM0 211 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 TECTBQ96PL2 329 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 RASSF4Q9H2L5 321 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 MMADHCQ9H3L0 296 aaPredicted RBP8.99□□□□□ -0.97
VPS39-208ENST00000564994 POMPQ9Y244 141 aa8.99□□□□□ -0.97
VPS39-208ENST00000564994 IGHV3OR15-7A0A075B7D8 119 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 TRAV38-1A0A0B4J264 116 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.98□□□□□ -0.97
VPS39-208ENST00000564994 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.98□□□□□ -0.97
VPS39-208ENST00000564994 ADAM20O43506 726 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 APOC1P02654 83 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 LYNP07948 512 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 SFTPBP07988 381 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 HKR1P10072 659 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 PAICSP22234 425 aaKnown RBP8.98□□□□□ -0.97
VPS39-208ENST00000564994 SLC2A5P22732 501 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 ACKR3P25106 362 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 NAA10P41227 235 aaPredicted RBP8.98□□□□□ -0.97
VPS39-208ENST00000564994 GSK3AP49840 483 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 NPY4RP50391 375 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 HCCSP53701 268 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 CSNK2BP67870 215 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 SLC9A3R2Q15599 337 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 GFOD2Q3B7J2 385 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 DNAL1Q4LDG9 190 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 TEX36Q5VZQ5 186 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 BRD3OSQ6XYD6 125 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 FGFRL1Q8N441 504 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 C3orf56Q8N813 242 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 OR1M1Q8NGA1 313 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 OR52H1Q8NGJ2 320 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 OR8S1Q8NH09 359 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 THEM6Q8WUY1 208 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 TAF15Q92804 592 aaKnown RBP eCLIP8.98□□□□□ -0.97
VPS39-208ENST00000564994 PGAM5Q96HS1 289 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 LYZL4Q96KX0 146 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 ZNF556Q9HAH1 456 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 SLC25A19Q9HC21 320 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 C14orf119Q9NWQ9 140 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 ERVK-18Q9QC07 812 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 DNAJB9Q9UBS3 223 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 RHBDD3Q9Y3P4 386 aa8.98□□□□□ -0.97
VPS39-208ENST00000564994 A0A1B0GW55 424 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms