RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 PLEKHA1Q9HB21 404 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 TMEM138Q9NPI0 162 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 GPR84Q9NQS5 396 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 SLC17A5Q9NRA2 495 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 C14orf119Q9NWQ9 140 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 TAS2R4Q9NYW5 299 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 NCKAP5O14513 1909 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 DNAJC13O75165 2243 aa7.79□□□□□ -1.16
VPS39-207ENST00000563692 ZNF407Q9C0G0 2248 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 SULT1B1O43704 296 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 DHRS3O75911 302 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 ALDOBP05062 364 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 MMP7P09237 267 aaPredicted RBP7.78□□□□□ -1.16
VPS39-207ENST00000563692 GLI4P10075 376 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 CD37P11049 281 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 SLC2A1P11166 492 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 CD79AP11912 226 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 HOXB1P14653 301 aaPredicted RBP7.78□□□□□ -1.16
VPS39-207ENST00000563692 CRYGSP22914 178 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 AZGP1P25311 298 aaKnown RBP7.78□□□□□ -1.16
VPS39-207ENST00000563692 HTR2CP28335 458 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 RAB1AP62820 205 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 CDSNQ15517 529 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 FAM189A2Q15884 450 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 BAK1Q16611 211 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 RSPO1Q2MKA7 263 aaPredicted RBP7.78□□□□□ -1.16
VPS39-207ENST00000563692 GFOD2Q3B7J2 385 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 C2orf76Q3KRA6 126 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 PABPC1L2AQ5JQF8 200 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 MZT2BQ6NZ67 158 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 PLXDC2Q6UX71 529 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 PRSS45Q7RTY3 260 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 SNX29P2Q8IUI4 249 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 JAGN1Q8N5M9 183 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 PLPP7Q8NBV4 271 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 DNAAF1Q8NEP3 725 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 OR1J2Q8NGS2 313 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 OR14K1Q8NGZ2 314 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 AKR7LQ8NHP1 331 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 SYNPRQ8TBG9 265 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 LGALS14Q8TCE9 139 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 PP6455Q8WZ26 134 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 AKAP1Q92667 903 aaKnown RBP eCLIP7.78□□□□□ -1.16
VPS39-207ENST00000563692 FAM3DQ96BQ1 224 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 SGK3Q96BR1 496 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 FAM71F1Q96KD3 344 aaPredicted RBP7.78□□□□□ -1.16
VPS39-207ENST00000563692 SDHCQ99643 169 aaPredicted RBP7.78□□□□□ -1.16
VPS39-207ENST00000563692 UQCC2Q9BRT2 126 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 THAP7Q9BT49 309 aaPredicted RBP7.78□□□□□ -1.16
VPS39-207ENST00000563692 WNT5BQ9H1J7 359 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 ABCG5Q9H222 651 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 DIABLOQ9NR28 239 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 CLCF1Q9UBD9 225 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 MALT1Q9UDY8 824 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 OR5V1Q9UGF6 321 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 MRPS7Q9Y2R9 242 aaKnown RBP7.78□□□□□ -1.16
VPS39-207ENST00000563692 CENPEQ02224 2701 aa7.78□□□□□ -1.16
VPS39-207ENST00000563692 ALPK2Q86TB3 2170 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 MYO9AB2RTY4 2548 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 A0A096LPE4 126 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 A0A0G2JMP0 313 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 A0A0X1KG70 313 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 LOC100289279A0A1B0GTE1 492 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 A0A1B0GVG6 124 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 A0A1W2PPZ6 126 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 LOC390937A0A1W2PQ73 354 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 DHRS7CA6NNS2 312 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 CENPXA8MT69 81 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 C19orf84I3L1E1 186 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 CTDSPLO15194 276 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 PFDN1O60925 122 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 ALX3O95076 343 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 IGLV3-1P01715 115 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 CRHP06850 196 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 CSF3P09919 207 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 PATE4P0C8F1 98 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 ARSBP15848 533 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 THBS4P35443 961 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 MAP2K3P46734 347 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 MMP15P51511 669 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 CLDN12P56749 244 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 MRPS10P82664 201 aaKnown RBP7.77□□□□□ -1.17
VPS39-207ENST00000563692 SPOCK1Q08629 439 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 RIPPLY1Q0D2K3 151 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 MALLQ13021 153 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 KRTAP27-1Q3LI81 207 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 ACSF3Q4G176 576 aaPredicted RBP7.77□□□□□ -1.17
VPS39-207ENST00000563692 C1orf100Q5SVJ3 147 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 GLYATL3Q5SZD4 288 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 C9orf135Q5VTT2 229 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 NSUN5P2Q63ZY6 315 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 NAA40Q86UY6 237 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 LURAP1LQ8IV03 231 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 CMTM4Q8IZR5 234 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 RPRMLQ8N4K4 120 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 SEMA6DQ8NFY4 1073 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 OR4M2Q8NGB6 313 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 OR51D1Q8NGF3 324 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 OR1K1Q8NGR3 316 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 OR6K3Q8NGY3 331 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms