RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 PRSS45Q7RTY3 260 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 LINC00596Q86U02 117 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 TMEM17Q86X19 198 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 SNX29P2Q8IUI4 249 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 ZNF584Q8IVC4 421 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 SAXO1Q8IYX7 474 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 ZNF101Q8IZC7 436 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 TCTE3Q8IZS6 198 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 FAM169BQ8N8A8 192 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 TMEM229BQ8NBD8 167 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 FDCSPQ8NFU4 85 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 OR51D1Q8NGF3 324 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 OR5H6Q8NGV6 325 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 ROBO4Q8WZ75 1007 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 HPS1Q92902 700 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 WDYHV1Q96HA8 205 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 FOXN4Q96NZ1 517 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 GFI1Q99684 422 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 ALX4Q9H161 411 aaPredicted RBP6.59□□□□□ -1.35
VPS39-204ENST00000561818 SLC6A15Q9H2J7 730 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 PLK3Q9H4B4 646 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 SLC2A8Q9NY64 477 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 IL36GQ9NZH8 169 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 EIF3KQ9UBQ5 218 aaKnown RBP6.59□□□□□ -1.35
VPS39-204ENST00000561818 PAIP2BQ9ULR5 123 aaKnown RBP6.59□□□□□ -1.35
VPS39-204ENST00000561818 MRPS28Q9Y2Q9 187 aaKnown RBP6.59□□□□□ -1.35
VPS39-204ENST00000561818 KCNMB2Q9Y691 235 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 VCANP13611 3396 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 TMEM272A0A1B0GTI8 110 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 DCDC2BA2VCK2 349 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 PINLYPA6NC86 204 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 TMEM14DPA8MWL7 114 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 WNT11O96014 354 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 CSTBP04080 98 aaKnown RBP6.58□□□□□ -1.36
VPS39-204ENST00000561818 LCATP04180 440 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 FAM157BP0CG42 384 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 B4GALT1P15291 398 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 ZNF32P17041 273 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 ERP29P30040 261 aaKnown RBP6.58□□□□□ -1.36
VPS39-204ENST00000561818 AGTR1P30556 359 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 KIR2DL3P43628 341 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 STARP49675 285 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 EIF2B2P49770 351 aaKnown RBP6.58□□□□□ -1.36
VPS39-204ENST00000561818 RBP2P50120 134 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 TAS2R46P59540 309 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 UBE2MP61081 183 aaKnown RBP6.58□□□□□ -1.36
VPS39-204ENST00000561818 RRAS2P62070 204 aaPredicted RBP6.58□□□□□ -1.36
VPS39-204ENST00000561818 MRPS15P82914 257 aaKnown RBP6.58□□□□□ -1.36
VPS39-204ENST00000561818 SRYQ05066 204 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 SPOCK1Q08629 439 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 PMPCAQ10713 525 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 P2RY6Q15077 328 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 OR8B8Q15620 311 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 GSG1Q2KHT4 349 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 TBC1D28Q2M2D7 210 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 PCGF3Q3KNV8 242 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 C3orf36Q3SXR2 165 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 ZFP69Q49AA0 526 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 PLA1AQ53H76 456 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 LPCAT3Q6P1A2 487 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 FAHD2BQ6P2I3 314 aaPredicted RBP6.58□□□□□ -1.36
VPS39-204ENST00000561818 INO80CQ6PI98 192 aaPredicted RBP6.58□□□□□ -1.36
VPS39-204ENST00000561818 COLCA1Q6ZS62 124 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 Q6ZT83 130 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 FAM214BQ7L5A3 538 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 LYPD6Q86Y78 171 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 SIAH3Q8IW03 269 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 UBE2J2Q8N2K1 259 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 LRRC18Q8N456 261 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 ARRDC1Q8N5I2 433 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 PXT1Q8NFP0 134 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 OR13C9Q8NGT0 318 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 OR10AC1Q8NH08 325 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 FNDC9Q8TBE3 224 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 GPX8Q8TED1 209 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 SNAPC3Q92966 411 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 SLC25A28Q96A46 364 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 FBXO17Q96EF6 278 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 BORCS8Q96FH0 119 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 FAHD2AQ96GK7 314 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 REEP6Q96HR9 211 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 FAM71F1Q96KD3 344 aaPredicted RBP6.58□□□□□ -1.36
VPS39-204ENST00000561818 HIST1H2AAQ96QV6 131 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 METTL9Q9H1A3 318 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 RANBP3Q9H6Z4 567 aaPredicted RBP6.58□□□□□ -1.36
VPS39-204ENST00000561818 AUNIPQ9H7T9 357 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 CNTD2Q9H8S5 307 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 SPACA1Q9HBV2 294 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 MYOZ1Q9NP98 299 aaPredicted RBP6.58□□□□□ -1.36
VPS39-204ENST00000561818 IFT46Q9NQC8 304 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 PLA2G3Q9NZ20 509 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 CLCF1Q9UBD9 225 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 NLKQ9UBE8 527 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 MPC1Q9Y5U8 109 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 DOCK10Q96BY6 2186 aa6.58□□□□□ -1.36
VPS39-204ENST00000561818 PCNX3Q9H6A9 2034 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 TRAV18A0A075B6X5 111 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 CIB4A0PJX0 185 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 OR5B21A6NL26 309 aa6.57□□□□□ -1.36
VPS39-204ENST00000561818 A6NL46 340 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms