RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 SPATS1Q496A3 300 aa15.75■□□□□ 0.11
VPS35-202ENST00000561713 LINC01590Q5TEZ4 76 aa15.75■□□□□ 0.11
VPS35-202ENST00000561713 DUX4L9Q6RFH8 374 aaPredicted RBP15.75■□□□□ 0.11
VPS35-202ENST00000561713 DHFR2Q86XF0 187 aa15.75■□□□□ 0.11
VPS35-202ENST00000561713 ERI1Q8IV48 349 aaKnown RBP15.75■□□□□ 0.11
VPS35-202ENST00000561713 LINC00471Q8N535 108 aa15.75■□□□□ 0.11
VPS35-202ENST00000561713 ERGIC1Q969X5 290 aa15.75■□□□□ 0.11
VPS35-202ENST00000561713 DGCR6LQ9BY27 220 aa15.75■□□□□ 0.11
VPS35-202ENST00000561713 MAGIXQ9H6Y5 334 aa15.75■□□□□ 0.11
VPS35-202ENST00000561713 MRPL15Q9P015 296 aaKnown RBP15.75■□□□□ 0.11
VPS35-202ENST00000561713 DUX4Q9UBX2 424 aa15.75■□□□□ 0.11
VPS35-202ENST00000561713 OOEPA6NGQ2 149 aa15.74■□□□□ 0.11
VPS35-202ENST00000561713 FSTL3O95633 263 aa15.74■□□□□ 0.11
VPS35-202ENST00000561713 PTBP3O95758 552 aaKnown RBP15.74■□□□□ 0.11
VPS35-202ENST00000561713 ZNF3P17036 446 aa15.74■□□□□ 0.11
VPS35-202ENST00000561713 CFHR2P36980 270 aa15.74■□□□□ 0.11
VPS35-202ENST00000561713 CSNK2BP67870 215 aa15.74■□□□□ 0.11
VPS35-202ENST00000561713 PCK2Q16822 640 aa15.74■□□□□ 0.11
VPS35-202ENST00000561713 MICAQ29983 383 aa15.74■□□□□ 0.11
VPS35-202ENST00000561713 C17orf107Q6ZR85 190 aa15.74■□□□□ 0.11
VPS35-202ENST00000561713 DPY19L4Q7Z388 723 aa15.74■□□□□ 0.11
VPS35-202ENST00000561713 FAM90A1Q86YD7 464 aa15.74■□□□□ 0.11
VPS35-202ENST00000561713 GCSAMQ8N6F7 178 aa15.74■□□□□ 0.11
VPS35-202ENST00000561713 TEX47Q8TBZ9 253 aa15.74■□□□□ 0.11
VPS35-202ENST00000561713 SLC22A4Q9H015 551 aa15.74■□□□□ 0.11
VPS35-202ENST00000561713 MARCH7Q9H992 704 aa15.74■□□□□ 0.11
VPS35-202ENST00000561713 BEX1Q9HBH7 125 aa15.74■□□□□ 0.11
VPS35-202ENST00000561713 BRD7Q9NPI1 651 aa15.74■□□□□ 0.11
VPS35-202ENST00000561713 NOP16Q9Y3C1 178 aaKnown RBP15.74■□□□□ 0.11
VPS35-202ENST00000561713 WNK1Q9H4A3 2382 aa15.73■□□□□ 0.11
VPS35-202ENST00000561713 GMDSO60547 372 aa15.73■□□□□ 0.11
VPS35-202ENST00000561713 IFNGP01579 166 aa15.73■□□□□ 0.11
VPS35-202ENST00000561713 CPT2P23786 658 aa15.73■□□□□ 0.11
VPS35-202ENST00000561713 HSD11B1P28845 292 aa15.73■□□□□ 0.11
VPS35-202ENST00000561713 RAG2P55895 527 aa15.73■□□□□ 0.11
VPS35-202ENST00000561713 RELBQ01201 579 aa15.73■□□□□ 0.11
VPS35-202ENST00000561713 TIGD6Q17RP2 521 aa15.73■□□□□ 0.11
VPS35-202ENST00000561713 FAM57BQ71RH2 274 aa15.73■□□□□ 0.11
VPS35-202ENST00000561713 SLC16A9Q7RTY1 509 aa15.73■□□□□ 0.11
VPS35-202ENST00000561713 REEP6Q96HR9 211 aa15.73■□□□□ 0.11
VPS35-202ENST00000561713 CCT8L2Q96SF2 557 aa15.73■□□□□ 0.11
VPS35-202ENST00000561713 TBX15Q96SF7 602 aa15.73■□□□□ 0.11
VPS35-202ENST00000561713 INTS14Q96SY0 518 aa15.73■□□□□ 0.11
VPS35-202ENST00000561713 CMC2Q9NRP2 79 aa15.73■□□□□ 0.11
VPS35-202ENST00000561713 BAIAP2Q9UQB8 552 aa15.73■□□□□ 0.11
VPS35-202ENST00000561713 A0A1B0GUS0 222 aa15.72■□□□□ 0.11
VPS35-202ENST00000561713 SRRM5B3KS81 715 aa15.72■□□□□ 0.11
VPS35-202ENST00000561713 H3BN98 237 aa15.72■□□□□ 0.11
VPS35-202ENST00000561713 XRCC2O43543 280 aa15.72■□□□□ 0.11
VPS35-202ENST00000561713 ZNF121P58317 390 aaPredicted RBP15.72■□□□□ 0.11
VPS35-202ENST00000561713 FAM3AP98173 230 aa15.72■□□□□ 0.11
VPS35-202ENST00000561713 FAM98BQ52LJ0 330 aaKnown RBP15.72■□□□□ 0.11
VPS35-202ENST00000561713 KLHL12Q53G59 568 aa15.72■□□□□ 0.11
VPS35-202ENST00000561713 GPR157Q5UAW9 335 aa15.72■□□□□ 0.11
VPS35-202ENST00000561713 FIP1L1Q6UN15 594 aaKnown RBP15.72■□□□□ 0.11
VPS35-202ENST00000561713 TMEM179BQ7Z7N9 219 aa15.72■□□□□ 0.11
VPS35-202ENST00000561713 PDZD9Q8IXQ8 264 aa15.72■□□□□ 0.11
VPS35-202ENST00000561713 OR8S1Q8NH09 359 aa15.72■□□□□ 0.11
VPS35-202ENST00000561713 LRRC29Q8WV35 223 aa15.72■□□□□ 0.11
VPS35-202ENST00000561713 ZDHHC16Q969W1 377 aa15.72■□□□□ 0.11
VPS35-202ENST00000561713 SEH1LQ96EE3 360 aa15.72■□□□□ 0.11
VPS35-202ENST00000561713 NSL1Q96IY1 281 aa15.72■□□□□ 0.11
VPS35-202ENST00000561713 CITED1Q99966 193 aa15.72■□□□□ 0.11
VPS35-202ENST00000561713 ABHD6Q9BV23 337 aa15.72■□□□□ 0.11
VPS35-202ENST00000561713 MUC13Q9H3R2 512 aa15.72■□□□□ 0.11
VPS35-202ENST00000561713 PRDM13Q9H4Q3 707 aa15.72■□□□□ 0.11
VPS35-202ENST00000561713 C1RLQ9NZP8 487 aa15.72■□□□□ 0.11
VPS35-202ENST00000561713 ZNF319Q9P2F9 582 aa15.72■□□□□ 0.11
VPS35-202ENST00000561713 ERVK-18Q9QC07 812 aa15.72■□□□□ 0.11
VPS35-202ENST00000561713 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP15.71■□□□□ 0.11
VPS35-202ENST00000561713 hCG_38984A0A1B0GV85 526 aa15.71■□□□□ 0.11
VPS35-202ENST00000561713 ANKRD30BLA7E2S9 258 aa15.71■□□□□ 0.11
VPS35-202ENST00000561713 SELENOFO60613 162 aa15.71■□□□□ 0.11
VPS35-202ENST00000561713 MMP9P14780 707 aa15.71■□□□□ 0.11
VPS35-202ENST00000561713 GSTT1P30711 240 aa15.71■□□□□ 0.11
VPS35-202ENST00000561713 MNAT1P51948 309 aa15.71■□□□□ 0.11
VPS35-202ENST00000561713 GMFBP60983 142 aa15.71■□□□□ 0.11
VPS35-202ENST00000561713 GRB2P62993 217 aaKnown RBP15.71■□□□□ 0.11
VPS35-202ENST00000561713 PRB3Q04118 309 aaPredicted RBP15.71■□□□□ 0.11
VPS35-202ENST00000561713 TRIM25Q14258 630 aaKnown RBP15.71■□□□□ 0.11
VPS35-202ENST00000561713 TEX30Q5JUR7 227 aa15.71■□□□□ 0.11
VPS35-202ENST00000561713 OLFML2AQ68BL7 652 aa15.71■□□□□ 0.11
VPS35-202ENST00000561713 BRICD5Q6PL45 260 aa15.71■□□□□ 0.11
VPS35-202ENST00000561713 RHOUQ7L0Q8 258 aa15.71■□□□□ 0.11
VPS35-202ENST00000561713 OR4F5Q8NH21 305 aa15.71■□□□□ 0.11
VPS35-202ENST00000561713 ST8SIA4Q92187 359 aa15.71■□□□□ 0.11
VPS35-202ENST00000561713 SPSB4Q96A44 273 aa15.71■□□□□ 0.11
VPS35-202ENST00000561713 FEVQ99581 238 aa15.71■□□□□ 0.11
VPS35-202ENST00000561713 OR51V1Q9H2C8 321 aa15.71■□□□□ 0.11
VPS35-202ENST00000561713 TRAV38-1A0A0B4J264 116 aa15.7■□□□□ 0.1
VPS35-202ENST00000561713 ZNF879B4DU55 563 aa15.7■□□□□ 0.1
VPS35-202ENST00000561713 DVL1O14640 695 aa15.7■□□□□ 0.1
VPS35-202ENST00000561713 TOX4O94842 621 aa15.7■□□□□ 0.1
VPS35-202ENST00000561713 TFF1P04155 84 aa15.7■□□□□ 0.1
VPS35-202ENST00000561713 CRYBA1P05813 215 aa15.7■□□□□ 0.1
VPS35-202ENST00000561713 POU1F1P28069 291 aa15.7■□□□□ 0.1
VPS35-202ENST00000561713 GRK5P34947 590 aa15.7■□□□□ 0.1
VPS35-202ENST00000561713 KRTAP10-3P60369 221 aa15.7■□□□□ 0.1
VPS35-202ENST00000561713 KCNJ8Q15842 424 aa15.7■□□□□ 0.1
VPS35-202ENST00000561713 PRSS45Q7RTY3 260 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms