RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 RGCCQ9H4X1 137 aa10.18□□□□□ -0.78
LDLR-212ENST00000560467 NEK6Q9HC98 313 aa10.18□□□□□ -0.78
LDLR-212ENST00000560467 FRRS1LQ9P0K9 344 aa10.18□□□□□ -0.78
LDLR-212ENST00000560467 HHLA2Q9UM44 414 aa10.18□□□□□ -0.78
LDLR-212ENST00000560467 TRDV1A0A1B0GX56 115 aa10.17□□□□□ -0.78
LDLR-212ENST00000560467 VSTM5A8MXK1 200 aa10.17□□□□□ -0.78
LDLR-212ENST00000560467 SYT7O43581 403 aa10.17□□□□□ -0.78
LDLR-212ENST00000560467 ABHD16AO95870 558 aa10.17□□□□□ -0.78
LDLR-212ENST00000560467 ISG15P05161 165 aa10.17□□□□□ -0.78
LDLR-212ENST00000560467 CD3EP07766 207 aa10.17□□□□□ -0.78
LDLR-212ENST00000560467 OCM2P0CE71 109 aa10.17□□□□□ -0.78
LDLR-212ENST00000560467 OCMP0CE72 109 aaPredicted RBP10.17□□□□□ -0.78
LDLR-212ENST00000560467 GADD45AP24522 165 aa10.17□□□□□ -0.78
LDLR-212ENST00000560467 MYL9P24844 172 aa10.17□□□□□ -0.78
LDLR-212ENST00000560467 FOXG1P55316 489 aaPredicted RBP10.17□□□□□ -0.78
LDLR-212ENST00000560467 PPA1Q15181 289 aa10.17□□□□□ -0.78
LDLR-212ENST00000560467 TAB1Q15750 504 aa10.17□□□□□ -0.78
LDLR-212ENST00000560467 ACSM3Q53FZ2 586 aa10.17□□□□□ -0.78
LDLR-212ENST00000560467 NCMAPQ5T1S8 102 aa10.17□□□□□ -0.78
LDLR-212ENST00000560467 SEZ6L2Q6UXD5 910 aa10.17□□□□□ -0.78
LDLR-212ENST00000560467 ELMOD2Q8IZ81 293 aa10.17□□□□□ -0.78
LDLR-212ENST00000560467 TMEM158Q8WZ71 300 aa10.17□□□□□ -0.78
LDLR-212ENST00000560467 APOBEC3DQ96AK3 386 aaPredicted RBP10.17□□□□□ -0.78
LDLR-212ENST00000560467 PLEKHA1Q9HB21 404 aa10.17□□□□□ -0.78
LDLR-212ENST00000560467 PNRC2Q9NPJ4 139 aaKnown RBP10.17□□□□□ -0.78
LDLR-212ENST00000560467 B3GNT2Q9NY97 397 aa10.17□□□□□ -0.78
LDLR-212ENST00000560467 NUFIP1Q9UHK0 495 aaKnown RBP10.17□□□□□ -0.78
LDLR-212ENST00000560467 ENPP5Q9UJA9 477 aa10.17□□□□□ -0.78
LDLR-212ENST00000560467 DHDHQ9UQ10 334 aa10.17□□□□□ -0.78
LDLR-212ENST00000560467 CEPT1Q9Y6K0 416 aa10.17□□□□□ -0.78
LDLR-212ENST00000560467 ALPK2Q86TB3 2170 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 OR4C45A6NMZ5 311 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 J3QW42 95 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 PDCD5O14737 125 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 PHF1O43189 567 aaPredicted RBP10.16□□□□□ -0.78
LDLR-212ENST00000560467 ZFPL1O95159 310 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 LALBAP00709 142 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 CRYAAP02489 173 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 PSKH1P11801 424 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 ZNF20P17024 532 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 ACHEP22303 614 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 TUBG1P23258 451 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 APEX1P27695 318 aaKnown RBP10.16□□□□□ -0.78
LDLR-212ENST00000560467 SOX6P35712 828 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 RAD52P43351 418 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 IDH3GP51553 393 aaPredicted RBP10.16□□□□□ -0.78
LDLR-212ENST00000560467 PSMD7P51665 324 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 LSM3P62310 102 aaKnown RBP10.16□□□□□ -0.78
LDLR-212ENST00000560467 RPS25P62851 125 aaKnown RBP10.16□□□□□ -0.78
LDLR-212ENST00000560467 TUBA1BP68363 451 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 BSPH1Q075Z2 132 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 SSX1Q16384 188 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 ODF4Q2M2E3 257 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 GFOD2Q3B7J2 385 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 CHRFAM7AQ494W8 412 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 Q499Y3 187 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 ZNF672Q499Z4 452 aaPredicted RBP10.16□□□□□ -0.78
LDLR-212ENST00000560467 WDR38Q5JTN6 314 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 DNM1P46Q6ZS02 220 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 USP43Q70EL4 1123 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 TUBA1AQ71U36 451 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 DOK3Q7L591 496 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 FTMTQ8N4E7 242 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 CPEB3Q8NE35 698 aaKnown RBP10.16□□□□□ -0.78
LDLR-212ENST00000560467 OR10S1Q8NGN2 331 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 OR13C3Q8NGS6 347 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 ISOC1Q96CN7 298 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 PDCD1LG2Q9BQ51 273 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 OPA3Q9H6K4 179 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 TUBG2Q9NRH3 451 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 FAM206AQ9NX38 181 aa10.16□□□□□ -0.78
LDLR-212ENST00000560467 CADP27708 2225 aa10.15□□□□□ -0.78
LDLR-212ENST00000560467 IGHV4-30-2A0A087WSY4 118 aa10.15□□□□□ -0.78
LDLR-212ENST00000560467 A0A0U1RQV5 110 aa10.15□□□□□ -0.78
LDLR-212ENST00000560467 A0A1W2PR80 420 aa10.15□□□□□ -0.78
LDLR-212ENST00000560467 A8MV72 311 aaPredicted RBP10.15□□□□□ -0.78
LDLR-212ENST00000560467 PRR32B1ATL7 298 aa10.15□□□□□ -0.78
LDLR-212ENST00000560467 XRCC2O43543 280 aa10.15□□□□□ -0.78
LDLR-212ENST00000560467 GABARAPO95166 117 aa10.15□□□□□ -0.78
LDLR-212ENST00000560467 CD8AP01732 235 aa10.15□□□□□ -0.78
LDLR-212ENST00000560467 ACSM4P0C7M7 580 aa10.15□□□□□ -0.78
LDLR-212ENST00000560467 SLC2A1P11166 492 aa10.15□□□□□ -0.78
LDLR-212ENST00000560467 FGF9P31371 208 aaPredicted RBP10.15□□□□□ -0.78
LDLR-212ENST00000560467 GNALP38405 381 aa10.15□□□□□ -0.78
LDLR-212ENST00000560467 SERPINB10P48595 397 aa10.15□□□□□ -0.78
LDLR-212ENST00000560467 NANOS3P60323 173 aaKnown RBP10.15□□□□□ -0.78
LDLR-212ENST00000560467 C3orf36Q3SXR2 165 aa10.15□□□□□ -0.78
LDLR-212ENST00000560467 TMEM108Q6UXF1 575 aa10.15□□□□□ -0.78
LDLR-212ENST00000560467 PRSS35Q8N3Z0 413 aa10.15□□□□□ -0.78
LDLR-212ENST00000560467 WDR31Q8NA23 367 aa10.15□□□□□ -0.78
LDLR-212ENST00000560467 TRAF4Q9BUZ4 470 aaPredicted RBP10.15□□□□□ -0.78
LDLR-212ENST00000560467 C1QTNF6Q9BXI9 259 aa10.15□□□□□ -0.78
LDLR-212ENST00000560467 OR51E2Q9H255 320 aa10.15□□□□□ -0.78
LDLR-212ENST00000560467 ESRP2Q9H6T0 727 aaKnown RBP10.15□□□□□ -0.78
LDLR-212ENST00000560467 TCF7L1Q9HCS4 588 aa10.15□□□□□ -0.78
LDLR-212ENST00000560467 TBCCD1Q9NVR7 557 aa10.15□□□□□ -0.78
LDLR-212ENST00000560467 SLC22A13Q9Y226 551 aa10.15□□□□□ -0.78
LDLR-212ENST00000560467 SIRT4Q9Y6E7 314 aaPredicted RBP10.15□□□□□ -0.78
LDLR-212ENST00000560467 ANK2Q01484 3957 aa10.15□□□□□ -0.78
LDLR-212ENST00000560467 A0A096LNT2 108 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms