RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 FAM19A4Q96LR4 140 aa1.01□□□□□ -2.25
USP3-209ENST00000558925 C18orf15Q96N68 181 aa1.01□□□□□ -2.25
USP3-209ENST00000558925 RBBP8Q99708 897 aa1.01□□□□□ -2.25
USP3-209ENST00000558925 HSD17B10Q99714 261 aaKnown RBP1.01□□□□□ -2.25
USP3-209ENST00000558925 UTP23Q9BRU9 249 aaKnown RBP1.01□□□□□ -2.25
USP3-209ENST00000558925 OSBPL11Q9BXB4 747 aa1.01□□□□□ -2.25
USP3-209ENST00000558925 SLC17A9Q9BYT1 436 aa1.01□□□□□ -2.25
USP3-209ENST00000558925 TM6SF2Q9BZW4 377 aa1.01□□□□□ -2.25
USP3-209ENST00000558925 PARP12Q9H0J9 701 aaKnown RBP1.01□□□□□ -2.25
USP3-209ENST00000558925 PORCNQ9H237 461 aa1.01□□□□□ -2.25
USP3-209ENST00000558925 VCXQ9H320 206 aa1.01□□□□□ -2.25
USP3-209ENST00000558925 XKR8Q9H6D3 395 aa1.01□□□□□ -2.25
USP3-209ENST00000558925 ZNF430Q9H8G1 570 aaPredicted RBP1.01□□□□□ -2.25
USP3-209ENST00000558925 ANKHQ9HCJ1 492 aa1.01□□□□□ -2.25
USP3-209ENST00000558925 LZTFL1Q9NQ48 299 aa1.01□□□□□ -2.25
USP3-209ENST00000558925 ZNF355PQ9NSJ1 428 aa1.01□□□□□ -2.25
USP3-209ENST00000558925 FAM49BQ9NUQ9 324 aa1.01□□□□□ -2.25
USP3-209ENST00000558925 STMN3Q9NZ72 180 aa1.01□□□□□ -2.25
USP3-209ENST00000558925 IFNKQ9P0W0 207 aa1.01□□□□□ -2.25
USP3-209ENST00000558925 ZNF229Q9UJW7 825 aa1.01□□□□□ -2.25
USP3-209ENST00000558925 FLVCR2Q9UPI3 526 aa1.01□□□□□ -2.25
USP3-209ENST00000558925 HYOU1Q9Y4L1 999 aa1.01□□□□□ -2.25
USP3-209ENST00000558925 KLF12Q9Y4X4 402 aa1.01□□□□□ -2.25
USP3-209ENST00000558925 SVILO95425 2214 aa1.01□□□□□ -2.25
USP3-209ENST00000558925 LOXHD1Q8IVV2 1947 aa1.01□□□□□ -2.25
USP3-209ENST00000558925 FHOD3Q2V2M9 1422 aa1□□□□□ -2.25
USP3-209ENST00000558925 CARMIL3Q8ND23 1372 aa1□□□□□ -2.25
USP3-209ENST00000558925 IGLV1-50A0A075B6I6 118 aa1□□□□□ -2.25
USP3-209ENST00000558925 IGLV3-16A0A075B6K0 115 aa1□□□□□ -2.25
USP3-209ENST00000558925 TRAV8-7A0A075B6U6 113 aa1□□□□□ -2.25
USP3-209ENST00000558925 A0A0A6YYD5 115 aa1□□□□□ -2.25
USP3-209ENST00000558925 TRAV19A0A0A6YYK7 116 aa1□□□□□ -2.25
USP3-209ENST00000558925 IGHV1OR15-9A0A0B4J2B8 117 aa1□□□□□ -2.25
USP3-209ENST00000558925 A0A1W2PRF3 423 aa1□□□□□ -2.25
USP3-209ENST00000558925 A0A1W2PRM7 423 aa1□□□□□ -2.25
USP3-209ENST00000558925 TMEM223A0PJW6 202 aa1□□□□□ -2.25
USP3-209ENST00000558925 ZNF705GA8MUZ8 300 aaPredicted RBP1□□□□□ -2.25
USP3-209ENST00000558925 FAM25EA8MYX2 175 aa1□□□□□ -2.25
USP3-209ENST00000558925 RSPH10B2B2RC85 870 aa1□□□□□ -2.25
USP3-209ENST00000558925 KRBOX1C9JBD0 128 aa1□□□□□ -2.25
USP3-209ENST00000558925 LINC01619G3V211 115 aa1□□□□□ -2.25
USP3-209ENST00000558925 H0YJW9 148 aa1□□□□□ -2.25
USP3-209ENST00000558925 SOCS1O15524 211 aa1□□□□□ -2.25
USP3-209ENST00000558925 ENSAO43768 121 aaKnown RBP1□□□□□ -2.25
USP3-209ENST00000558925 CCNKO75909 580 aa1□□□□□ -2.25
USP3-209ENST00000558925 GLSO94925 669 aaPredicted RBP1□□□□□ -2.25
USP3-209ENST00000558925 SEMA3DO95025 777 aa1□□□□□ -2.25
USP3-209ENST00000558925 CTDNEP1O95476 244 aa1□□□□□ -2.25
USP3-209ENST00000558925 IGKV1D-16P01601 117 aa1□□□□□ -2.25
USP3-209ENST00000558925 IGLV3-25P01717 112 aa1□□□□□ -2.25
USP3-209ENST00000558925 APCSP02743 223 aa1□□□□□ -2.25
USP3-209ENST00000558925 OR56A5P0C7T3 313 aa1□□□□□ -2.25
USP3-209ENST00000558925 RSPH10BP0C881 870 aa1□□□□□ -2.25
USP3-209ENST00000558925 LIPCP11150 499 aa1□□□□□ -2.25
USP3-209ENST00000558925 HOXB8P17481 243 aaPredicted RBP1□□□□□ -2.25
USP3-209ENST00000558925 IGFBP3P17936 291 aaPredicted RBP1□□□□□ -2.25
USP3-209ENST00000558925 HTR2CP28335 458 aa1□□□□□ -2.25
USP3-209ENST00000558925 TGFBR1P36897 503 aa1□□□□□ -2.25
USP3-209ENST00000558925 TALDO1P37837 337 aa1□□□□□ -2.25
USP3-209ENST00000558925 GPR4P46093 362 aa1□□□□□ -2.25
USP3-209ENST00000558925 HCCSP53701 268 aa1□□□□□ -2.25
USP3-209ENST00000558925 HADHBP55084 474 aaKnown RBP1□□□□□ -2.25
USP3-209ENST00000558925 AP1S2P56377 157 aa1□□□□□ -2.25
USP3-209ENST00000558925 MLF1P58340 268 aa1□□□□□ -2.25
USP3-209ENST00000558925 TAS2R31P59538 309 aa1□□□□□ -2.25
USP3-209ENST00000558925 OR2B8PP59922 312 aa1□□□□□ -2.25
USP3-209ENST00000558925 YWHAEP62258 255 aaKnown RBP1□□□□□ -2.25
USP3-209ENST00000558925 RPL31P62899 125 aaKnown RBP1□□□□□ -2.25
USP3-209ENST00000558925 SLC35B1P78383 322 aa1□□□□□ -2.25
USP3-209ENST00000558925 CRADDP78560 199 aa1□□□□□ -2.25
USP3-209ENST00000558925 DYNC1I2Q13409 638 aaKnown RBP1□□□□□ -2.25
USP3-209ENST00000558925 EBI3Q14213 229 aa1□□□□□ -2.25
USP3-209ENST00000558925 MAD2L1BPQ15013 274 aaPredicted RBP1□□□□□ -2.25
USP3-209ENST00000558925 TAL2Q16559 108 aa1□□□□□ -2.25
USP3-209ENST00000558925 ATP6V1FQ16864 119 aa1□□□□□ -2.25
USP3-209ENST00000558925 CHRFAM7AQ494W8 412 aa1□□□□□ -2.25
USP3-209ENST00000558925 C6orf99Q4VX62 202 aa1□□□□□ -2.25
USP3-209ENST00000558925 LINC00483Q53H64 154 aa1□□□□□ -2.25
USP3-209ENST00000558925 HSP90AA4PQ58FG1 418 aa1□□□□□ -2.25
USP3-209ENST00000558925 RNASE13Q5GAN3 156 aaKnown RBP1□□□□□ -2.25
USP3-209ENST00000558925 TCEAL5Q5H9L2 206 aa1□□□□□ -2.25
USP3-209ENST00000558925 ZNF684Q5T5D7 378 aa1□□□□□ -2.25
USP3-209ENST00000558925 CPTPQ5TA50 214 aa1□□□□□ -2.25
USP3-209ENST00000558925 ZNF691Q5VV52 312 aa1□□□□□ -2.25
USP3-209ENST00000558925 Q5W150 140 aa1□□□□□ -2.25
USP3-209ENST00000558925 DUPD1Q68J44 220 aa1□□□□□ -2.25
USP3-209ENST00000558925 APOBEC3HQ6NTF7 200 aaKnown RBP1□□□□□ -2.25
USP3-209ENST00000558925 OPN5Q6U736 354 aa1□□□□□ -2.25
USP3-209ENST00000558925 RTL4Q6ZR62 310 aa1□□□□□ -2.25
USP3-209ENST00000558925 NDUFAF7Q7L592 441 aa1□□□□□ -2.25
USP3-209ENST00000558925 SLC16A13Q7RTY0 426 aa1□□□□□ -2.25
USP3-209ENST00000558925 SNX20Q7Z614 316 aa1□□□□□ -2.25
USP3-209ENST00000558925 ZCCHC24Q8N2G6 241 aaKnown RBP1□□□□□ -2.25
USP3-209ENST00000558925 CYB561A3Q8NBI2 242 aa1□□□□□ -2.25
USP3-209ENST00000558925 OR4D6Q8NGJ1 314 aa1□□□□□ -2.25
USP3-209ENST00000558925 OR51A7Q8NH64 312 aa1□□□□□ -2.25
USP3-209ENST00000558925 NDNFQ8TB73 568 aa1□□□□□ -2.25
USP3-209ENST00000558925 RXFP4Q8TDU9 374 aa1□□□□□ -2.25
USP3-209ENST00000558925 TMEM234Q8WY98 164 aa1□□□□□ -2.25
USP3-209ENST00000558925 ESR2Q92731 530 aa1□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms