RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 BHLHE23Q8NDY6 225 aa8.24□□□□□ -1.09
CUX1-216ENST00000558469 OR13C3Q8NGS6 347 aa8.24□□□□□ -1.09
CUX1-216ENST00000558469 TSEN15Q8WW01 171 aaKnown RBP8.24□□□□□ -1.09
CUX1-216ENST00000558469 TMEM203Q969S6 136 aa8.24□□□□□ -1.09
CUX1-216ENST00000558469 FBXW5Q969U6 566 aa8.24□□□□□ -1.09
CUX1-216ENST00000558469 TMIGD2Q96BF3 282 aa8.24□□□□□ -1.09
CUX1-216ENST00000558469 HAVCR1Q96D42 359 aa8.24□□□□□ -1.09
CUX1-216ENST00000558469 DHRS9Q9BPW9 319 aa8.24□□□□□ -1.09
CUX1-216ENST00000558469 SYT3Q9BQG1 590 aa8.24□□□□□ -1.09
CUX1-216ENST00000558469 MRPL37Q9BZE1 423 aaKnown RBP8.24□□□□□ -1.09
CUX1-216ENST00000558469 OPA3Q9H6K4 179 aa8.24□□□□□ -1.09
CUX1-216ENST00000558469 ZNF442Q9H7R0 627 aa8.24□□□□□ -1.09
CUX1-216ENST00000558469 NDUFB11Q9NX14 153 aa8.24□□□□□ -1.09
CUX1-216ENST00000558469 PIGLQ9Y2B2 252 aa8.24□□□□□ -1.09
CUX1-216ENST00000558469 ARFGEF3Q5TH69 2177 aa8.24□□□□□ -1.09
CUX1-216ENST00000558469 A0A1W2PPR1 153 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 LOC390937A0A1W2PQ73 354 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 H3BSA7 217 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 HS3ST1O14792 307 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 TIMM8AO60220 97 aaPredicted RBP8.23□□□□□ -1.09
CUX1-216ENST00000558469 CTAG2O75638 210 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 DHRS3O75911 302 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 IGHV3-13P01766 116 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 OCM2P0CE71 109 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 SELEP16581 610 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 CD36P16671 472 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 ZNF12P17014 697 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 CD53P19397 219 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 KITLGP21583 273 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 ACKR3P25106 362 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 GABRA5P31644 462 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 SERPINF1P36955 418 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 TGFBR2P37173 567 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 RPL5P46777 297 aaKnown RBP8.23□□□□□ -1.09
CUX1-216ENST00000558469 SOX2P48431 317 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 ALDH3B2P48448 385 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 SELENOVP59797 346 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 RPS11P62280 158 aaKnown RBP eCLIP8.23□□□□□ -1.09
CUX1-216ENST00000558469 TNK1Q13470 666 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 INSL4Q14641 139 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 OR8B8Q15620 311 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 TRAM1Q15629 374 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 ALKBH6Q3KRA9 238 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 TMEM255AQ5JRV8 349 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 HIST2H2BCQ6DN03 193 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 GPR141Q7Z602 305 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 TMEM200AQ86VY9 491 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 ZNF295-AS1Q8N0V1 137 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 MS4A15Q8N5U1 240 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 CCDC54Q8NEL0 328 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 SEMA6DQ8NFY4 1073 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 OR56B2PQ8NGI1 322 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 OR13F1Q8NGS4 319 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 OR14K1Q8NGZ2 314 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 GPR148Q8TDV2 347 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 MRPL24Q96A35 216 aaKnown RBP8.23□□□□□ -1.09
CUX1-216ENST00000558469 FGGYQ96C11 551 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 CLEC4MQ9H2X3 399 aaPredicted RBP8.23□□□□□ -1.09
CUX1-216ENST00000558469 PLK3Q9H4B4 646 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 UBTD1Q9HAC8 227 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 PLEKHA1Q9HB21 404 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 MYEF2Q9P2K5 600 aaKnown RBP8.23□□□□□ -1.09
CUX1-216ENST00000558469 PURGQ9UJV8 347 aaKnown RBP8.23□□□□□ -1.09
CUX1-216ENST00000558469 DHDHQ9UQ10 334 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 SF3B6Q9Y3B4 125 aaKnown RBP8.23□□□□□ -1.09
CUX1-216ENST00000558469 V9GYS6 101 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 CELSR2Q9HCU4 2923 aa8.23□□□□□ -1.09
CUX1-216ENST00000558469 IGLV3-9A0A075B6K5 115 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 A0A1W2PPK0 400 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 A0A1W2PPW3 197 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 CD300LBA8K4G0 201 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 IQCF6A8MYZ5 107 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 ZNF879B4DU55 563 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 LILRA1O75019 489 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 RGS9O75916 674 aaPredicted RBP8.22□□□□□ -1.09
CUX1-216ENST00000558469 SERPINA3P01011 423 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 FAHP16930 419 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 ZNF20P17024 532 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 GADD45AP24522 165 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 PSMA1P25786 263 aaKnown RBP8.22□□□□□ -1.09
CUX1-216ENST00000558469 TTKP33981 857 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 GNALP38405 381 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 DDOSTP39656 456 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 FABP5Q01469 135 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 TLE4Q04727 773 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 RIPPLY1Q0D2K3 151 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 Q499Y3 187 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 ACSM3Q53FZ2 586 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 Q6ZSR3 168 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 CEACAM19Q7Z692 300 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 FBXL14Q8N1E6 418 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 MUC15Q8N387 334 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 CSNK2A3Q8NEV1 391 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 PIGCQ92535 297 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 TMEM106AQ96A25 262 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 YIPF6Q96EC8 236 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 OR14A2Q96R54 314 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 ZNF275Q9NSD4 429 aaPredicted RBP8.22□□□□□ -1.09
CUX1-216ENST00000558469 FAIMQ9NVQ4 179 aa8.22□□□□□ -1.09
CUX1-216ENST00000558469 TAAR3PQ9P1P4 343 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms