RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 TMEM14AQ9Y6G1 99 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 SBNO1A3KN83 1393 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 TRAV40A0A0B4J280 105 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 A0A0B4J2E0 115 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 IGKV1-8A0A0C4DH67 115 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 A0A0J9YXV3 536 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 TMEM223A0PJW6 202 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 C7orf66A4D0T2 115 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 HACD1B0YJ81 288 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 YKT6O15498 198 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 ZNF207O43670 478 aaKnown RBP2.36□□□□□ -2.03
SCFD1-221ENST00000556534 SLC16A7O60669 478 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 VAPBO95292 243 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 MPZL1O95297 269 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 PLEKHA8P1O95397 391 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 BCHEP06276 602 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 CD3GP09693 182 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 LINC00869P0C866 280 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 CD37P11049 281 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 RAB5AP20339 215 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 HTR2CP28335 458 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 PFN2P35080 140 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 MYCNOSP40205 109 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 PSMC5P62195 406 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 DMTNQ08495 405 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 TCP10Q12799 353 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 TFDP2Q14188 446 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 C18orf21Q32NC0 220 aaPredicted RBP2.36□□□□□ -2.03
SCFD1-221ENST00000556534 COX19Q49B96 90 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 ZNF684Q5T5D7 378 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 TRIML2Q8N7C3 387 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 WDR31Q8NA23 367 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 DRAXINQ8NBI3 349 aaPredicted RBP2.36□□□□□ -2.03
SCFD1-221ENST00000556534 LRRC20Q8TCA0 184 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 ASZ1Q8WWH4 475 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 RGP1Q92546 391 aaPredicted RBP2.36□□□□□ -2.03
SCFD1-221ENST00000556534 NEURL3Q96EH8 262 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 CENPNQ96H22 339 aaPredicted RBP2.36□□□□□ -2.03
SCFD1-221ENST00000556534 RNF170Q96K19 258 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 OR10C1Q96KK4 312 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 LZTS2Q9BRK4 669 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 RAB1BQ9H0U4 201 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 ARMC7Q9H6L4 198 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 EDA2RQ9HAV5 297 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 ANKHQ9HCJ1 492 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 CSNK1G1Q9HCP0 422 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 FBXO8Q9NRD0 319 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 UVRAGQ9P2Y5 699 aa2.36□□□□□ -2.03
SCFD1-221ENST00000556534 TMEM131Q92545 1883 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 K7ERQ8 282 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 TRAPPC6AO75865 159 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 RCBTB2O95199 551 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 SLC25A14O95258 325 aaPredicted RBP2.35□□□□□ -2.03
SCFD1-221ENST00000556534 LCA5LO95447 670 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 CTSLP07711 333 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 OR8U9P0C7N5 309 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 ERGP11308 486 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 GFAPP14136 432 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 RAB3AP20336 220 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 CCNOP22674 350 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 WARSP23381 471 aaKnown RBP2.35□□□□□ -2.03
SCFD1-221ENST00000556534 PPICP45877 212 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 P2RX1P51575 399 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 VSX2P58304 361 aaPredicted RBP2.35□□□□□ -2.03
SCFD1-221ENST00000556534 TAS2R39P59534 338 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 CACNG7P62955 275 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 ART3Q13508 389 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 KIR2DS1Q14954 304 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 NDUFAF6Q330K2 333 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 THEM4Q5T1C6 240 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 METTL21CQ5VZV1 264 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 RWDD4Q6NW29 188 aaKnown RBP2.35□□□□□ -2.03
SCFD1-221ENST00000556534 DEGS2Q6QHC5 323 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 RBM45Q8IUH3 476 aaKnown RBP2.35□□□□□ -2.03
SCFD1-221ENST00000556534 ST13P4Q8IZP2 240 aaPredicted RBP2.35□□□□□ -2.03
SCFD1-221ENST00000556534 SYS1Q8N2H4 156 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 TCAIMQ8N3R3 496 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 GPR26Q8NDV2 337 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 OR8U1Q8NH10 309 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 ABHD3Q8WU67 409 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 TM4SF18Q96CE8 201 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 CPB2Q96IY4 423 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 SLC25A2Q9BXI2 301 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 SLIRPQ9GZT3 109 aaKnown RBP2.35□□□□□ -2.03
SCFD1-221ENST00000556534 PARP12Q9H0J9 701 aaKnown RBP2.35□□□□□ -2.03
SCFD1-221ENST00000556534 SAV1Q9H4B6 383 aaPredicted RBP2.35□□□□□ -2.03
SCFD1-221ENST00000556534 ZNF442Q9H7R0 627 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 SYNDIG1Q9H7V2 258 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 REEP1Q9H902 201 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 HMG20AQ9NP66 347 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 ZNF257Q9Y2Q1 563 aa2.35□□□□□ -2.03
SCFD1-221ENST00000556534 AQRO60306 1485 aaKnown RBP eCLIP2.34□□□□□ -2.032e-7■□□□□ 8.7
SCFD1-221ENST00000556534 SYCE1LA8MT33 242 aa2.34□□□□□ -2.03
SCFD1-221ENST00000556534 HSBP1L1C9JCN9 74 aa2.34□□□□□ -2.03
SCFD1-221ENST00000556534 K7EN84 100 aa2.34□□□□□ -2.03
SCFD1-221ENST00000556534 RAD51BO15315 384 aa2.34□□□□□ -2.03
SCFD1-221ENST00000556534 CTNSO60931 367 aa2.34□□□□□ -2.03
SCFD1-221ENST00000556534 SC5DO75845 299 aa2.34□□□□□ -2.03
SCFD1-221ENST00000556534 APOA1P02647 267 aa2.34□□□□□ -2.03
SCFD1-221ENST00000556534 HLA-DPB1P04440 258 aa2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms