RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 LRRC28Q86X40 367 aaPredicted RBP11.53□□□□□ -0.56
SHMT2-219ENST00000555563 ZNF679Q8IYX0 411 aa11.53□□□□□ -0.56
SHMT2-219ENST00000555563 SPICQ8N5J4 248 aa11.53□□□□□ -0.56
SHMT2-219ENST00000555563 Q8TCH9 128 aa11.53□□□□□ -0.56
SHMT2-219ENST00000555563 HRASLS5Q96KN8 279 aa11.53□□□□□ -0.56
SHMT2-219ENST00000555563 LYZL4Q96KX0 146 aa11.53□□□□□ -0.56
SHMT2-219ENST00000555563 MBOAT4Q96T53 435 aa11.53□□□□□ -0.56
SHMT2-219ENST00000555563 MNTQ99583 582 aa11.53□□□□□ -0.56
SHMT2-219ENST00000555563 C9orf16Q9BUW7 83 aa11.53□□□□□ -0.56
SHMT2-219ENST00000555563 PAPOLGQ9BWT3 736 aaKnown RBP11.53□□□□□ -0.56
SHMT2-219ENST00000555563 MROQ9BYG7 248 aa11.53□□□□□ -0.56
SHMT2-219ENST00000555563 PPP1R3EQ9H7J1 279 aa11.53□□□□□ -0.56
SHMT2-219ENST00000555563 UFSP2Q9NUQ7 469 aa11.53□□□□□ -0.56
SHMT2-219ENST00000555563 CLN6Q9NWW5 311 aa11.53□□□□□ -0.56
SHMT2-219ENST00000555563 IMPAD1Q9NX62 359 aa11.53□□□□□ -0.56
SHMT2-219ENST00000555563 TRAV20A0A0B4J274 112 aa11.52□□□□□ -0.57
SHMT2-219ENST00000555563 E9PQ18 207 aa11.52□□□□□ -0.57
SHMT2-219ENST00000555563 ZNF670-ZNF695F2Z2N8 137 aa11.52□□□□□ -0.57
SHMT2-219ENST00000555563 PHYHO14832 338 aa11.52□□□□□ -0.57
SHMT2-219ENST00000555563 MAGEB4O15481 346 aaPredicted RBP11.52□□□□□ -0.57
SHMT2-219ENST00000555563 ZNF254O75437 659 aa11.52□□□□□ -0.57
SHMT2-219ENST00000555563 ANPEPP15144 967 aa11.52□□□□□ -0.57
SHMT2-219ENST00000555563 SRD5A1P18405 259 aa11.52□□□□□ -0.57
SHMT2-219ENST00000555563 ACKR3P25106 362 aa11.52□□□□□ -0.57
SHMT2-219ENST00000555563 RIDAP52758 137 aaKnown RBP11.52□□□□□ -0.57
SHMT2-219ENST00000555563 HOXA4Q00056 320 aaPredicted RBP11.52□□□□□ -0.57
SHMT2-219ENST00000555563 ZNF829Q3KNS6 432 aaPredicted RBP11.52□□□□□ -0.57
SHMT2-219ENST00000555563 FAM201AQ5SY85 155 aa11.52□□□□□ -0.57
SHMT2-219ENST00000555563 SSX6Q7RTT6 188 aa11.52□□□□□ -0.57
SHMT2-219ENST00000555563 KLBQ86Z14 1044 aa11.52□□□□□ -0.57
SHMT2-219ENST00000555563 MUC20Q8N307 709 aaPredicted RBP11.52□□□□□ -0.57
SHMT2-219ENST00000555563 KLHL36Q8N4N3 616 aa11.52□□□□□ -0.57
SHMT2-219ENST00000555563 OR8S1Q8NH09 359 aa11.52□□□□□ -0.57
SHMT2-219ENST00000555563 STMN2Q93045 179 aa11.52□□□□□ -0.57
SHMT2-219ENST00000555563 UBE2FQ969M7 185 aa11.52□□□□□ -0.57
SHMT2-219ENST00000555563 ERGIC1Q969X5 290 aa11.52□□□□□ -0.57
SHMT2-219ENST00000555563 EME1Q96AY2 570 aa11.52□□□□□ -0.57
SHMT2-219ENST00000555563 SLC29A1Q99808 456 aa11.52□□□□□ -0.57
SHMT2-219ENST00000555563 APOL4Q9BPW4 351 aa11.52□□□□□ -0.57
SHMT2-219ENST00000555563 PCDHB10Q9UN67 800 aa11.52□□□□□ -0.57
SHMT2-219ENST00000555563 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.51□□□□□ -0.57
SHMT2-219ENST00000555563 TMEM269A0A1B0GVZ9 245 aa11.51□□□□□ -0.57
SHMT2-219ENST00000555563 CEACAM18A8MTB9 384 aa11.51□□□□□ -0.57
SHMT2-219ENST00000555563 F5H0A9 414 aaPredicted RBP11.51□□□□□ -0.57
SHMT2-219ENST00000555563 BAG2O95816 211 aa11.51□□□□□ -0.57
SHMT2-219ENST00000555563 IRF2P14316 349 aa11.51□□□□□ -0.57
SHMT2-219ENST00000555563 PCMT1P22061 227 aa11.51□□□□□ -0.57
SHMT2-219ENST00000555563 DCTDP32321 178 aa11.51□□□□□ -0.57
SHMT2-219ENST00000555563 GNALP38405 381 aa11.51□□□□□ -0.57
SHMT2-219ENST00000555563 SEC61A1P61619 476 aaKnown RBP11.51□□□□□ -0.57
SHMT2-219ENST00000555563 LCN2P80188 198 aa11.51□□□□□ -0.57
SHMT2-219ENST00000555563 EGR3Q06889 387 aa11.51□□□□□ -0.57
SHMT2-219ENST00000555563 POU4F2Q12837 409 aa11.51□□□□□ -0.57
SHMT2-219ENST00000555563 ZSCAN26Q16670 478 aa11.51□□□□□ -0.57
SHMT2-219ENST00000555563 PLEKHG7Q6ZR37 379 aa11.51□□□□□ -0.57
SHMT2-219ENST00000555563 WDR86Q86TI4 376 aa11.51□□□□□ -0.57
SHMT2-219ENST00000555563 C1orf87Q8N0U7 546 aa11.51□□□□□ -0.57
SHMT2-219ENST00000555563 SPERTQ8NA61 448 aa11.51□□□□□ -0.57
SHMT2-219ENST00000555563 CSNK2A3Q8NEV1 391 aa11.51□□□□□ -0.57
SHMT2-219ENST00000555563 OR11L1Q8NGX0 322 aa11.51□□□□□ -0.57
SHMT2-219ENST00000555563 TBX5Q99593 518 aa11.51□□□□□ -0.57
SHMT2-219ENST00000555563 PBOV1Q9GZY1 135 aa11.51□□□□□ -0.57
SHMT2-219ENST00000555563 FN3KRPQ9HA64 309 aa11.51□□□□□ -0.57
SHMT2-219ENST00000555563 PATZ1Q9HBE1 687 aaKnown RBP11.51□□□□□ -0.57
SHMT2-219ENST00000555563 G6PC2Q9NQR9 355 aa11.51□□□□□ -0.57
SHMT2-219ENST00000555563 NUFIP1Q9UHK0 495 aaKnown RBP11.51□□□□□ -0.57
SHMT2-219ENST00000555563 MRM2Q9UI43 246 aaKnown RBP11.51□□□□□ -0.57
SHMT2-219ENST00000555563 ZNF391Q9UJN7 358 aa11.51□□□□□ -0.57
SHMT2-219ENST00000555563 RHBDD3Q9Y3P4 386 aa11.51□□□□□ -0.57
SHMT2-219ENST00000555563 PPIAL4EA0A075B759 164 aa11.5□□□□□ -0.57
SHMT2-219ENST00000555563 A0A0U1RQV5 110 aa11.5□□□□□ -0.57
SHMT2-219ENST00000555563 A0A1W2PQL4 384 aaPredicted RBP11.5□□□□□ -0.57
SHMT2-219ENST00000555563 ACOD1A6NK06 481 aa11.5□□□□□ -0.57
SHMT2-219ENST00000555563 A6NLC8 198 aa11.5□□□□□ -0.57
SHMT2-219ENST00000555563 PPIAL4DF5H284 164 aa11.5□□□□□ -0.57
SHMT2-219ENST00000555563 ENTPD6O75354 484 aa11.5□□□□□ -0.57
SHMT2-219ENST00000555563 SRSF10O75494 262 aaKnown RBP11.5□□□□□ -0.57
SHMT2-219ENST00000555563 PNPP00491 289 aa11.5□□□□□ -0.57
SHMT2-219ENST00000555563 GRPP07492 148 aa11.5□□□□□ -0.57
SHMT2-219ENST00000555563 PPIAL4FP0DN26 164 aa11.5□□□□□ -0.57
SHMT2-219ENST00000555563 ZFP36P26651 326 aaKnown RBP11.5□□□□□ -0.57
SHMT2-219ENST00000555563 MZT1Q08AG7 82 aa11.5□□□□□ -0.57
SHMT2-219ENST00000555563 ZNF404Q494X3 552 aa11.5□□□□□ -0.57
SHMT2-219ENST00000555563 ZBTB49Q6ZSB9 765 aa11.5□□□□□ -0.57
SHMT2-219ENST00000555563 COMMD2Q86X83 199 aa11.5□□□□□ -0.57
SHMT2-219ENST00000555563 FTMTQ8N4E7 242 aa11.5□□□□□ -0.57
SHMT2-219ENST00000555563 PLPP7Q8NBV4 271 aa11.5□□□□□ -0.57
SHMT2-219ENST00000555563 C19orf18Q8NEA5 215 aa11.5□□□□□ -0.57
SHMT2-219ENST00000555563 OR10H4Q8NGA5 316 aa11.5□□□□□ -0.57
SHMT2-219ENST00000555563 RFKQ969G6 155 aa11.5□□□□□ -0.57
SHMT2-219ENST00000555563 TMEM246Q9BRR3 403 aa11.5□□□□□ -0.57
SHMT2-219ENST00000555563 TMEM165Q9HC07 324 aa11.5□□□□□ -0.57
SHMT2-219ENST00000555563 C14orf119Q9NWQ9 140 aa11.5□□□□□ -0.57
SHMT2-219ENST00000555563 C1orf123Q9NWV4 160 aa11.5□□□□□ -0.57
SHMT2-219ENST00000555563 PPIAL4AQ9Y536 164 aa11.5□□□□□ -0.57
SHMT2-219ENST00000555563 R4GMQ9 66 aa11.5□□□□□ -0.57
SHMT2-219ENST00000555563 JMJD1CQ15652 2540 aa11.5□□□□□ -0.57
SHMT2-219ENST00000555563 A0A0G2JMP0 313 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 A0A0X1KG70 313 aa11.49□□□□□ -0.57
SHMT2-219ENST00000555563 hCG_1807616A0A1W2PRN6 198 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms