RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 H2AFY2Q9P0M6 372 aaPredicted RBP9.72□□□□□ -0.85
CCDC88C-208ENST00000554165 E9PQ18 207 aa9.71□□□□□ -0.86
CCDC88C-208ENST00000554165 PHF1O43189 567 aaPredicted RBP9.71□□□□□ -0.86
CCDC88C-208ENST00000554165 GMDSO60547 372 aa9.71□□□□□ -0.86
CCDC88C-208ENST00000554165 BAG2O95816 211 aa9.71□□□□□ -0.86
CCDC88C-208ENST00000554165 SRD5A1P18405 259 aa9.71□□□□□ -0.86
CCDC88C-208ENST00000554165 CD80P33681 288 aa9.71□□□□□ -0.86
CCDC88C-208ENST00000554165 GATA4P43694 442 aa9.71□□□□□ -0.86
CCDC88C-208ENST00000554165 PSMA6P60900 246 aaKnown RBP9.71□□□□□ -0.86
CCDC88C-208ENST00000554165 CXCR4P61073 352 aa9.71□□□□□ -0.86
CCDC88C-208ENST00000554165 ROM1Q03395 351 aa9.71□□□□□ -0.86
CCDC88C-208ENST00000554165 ZNF322Q6U7Q0 402 aaPredicted RBP9.71□□□□□ -0.86
CCDC88C-208ENST00000554165 LYPD2Q6UXB3 125 aa9.71□□□□□ -0.86
CCDC88C-208ENST00000554165 RHOUQ7L0Q8 258 aa9.71□□□□□ -0.86
CCDC88C-208ENST00000554165 PQLC1Q8N2U9 271 aa9.71□□□□□ -0.86
CCDC88C-208ENST00000554165 OR51G2Q8NGK0 314 aa9.71□□□□□ -0.86
CCDC88C-208ENST00000554165 FAM81AQ8TBF8 368 aa9.71□□□□□ -0.86
CCDC88C-208ENST00000554165 RAB39BQ96DA2 213 aa9.71□□□□□ -0.86
CCDC88C-208ENST00000554165 TMEM246Q9BRR3 403 aa9.71□□□□□ -0.86
CCDC88C-208ENST00000554165 FGF23Q9GZV9 251 aaPredicted RBP9.71□□□□□ -0.86
CCDC88C-208ENST00000554165 PATZ1Q9HBE1 687 aaKnown RBP9.71□□□□□ -0.86
CCDC88C-208ENST00000554165 MMP26Q9NRE1 261 aa9.71□□□□□ -0.86
CCDC88C-208ENST00000554165 MRPL15Q9P015 296 aaKnown RBP9.71□□□□□ -0.86
CCDC88C-208ENST00000554165 MRM2Q9UI43 246 aaKnown RBP9.71□□□□□ -0.86
CCDC88C-208ENST00000554165 IKZF2Q9UKS7 526 aa9.71□□□□□ -0.86
CCDC88C-208ENST00000554165 PCDHB10Q9UN67 800 aa9.71□□□□□ -0.86
CCDC88C-208ENST00000554165 LOC105371242A0A075B767 164 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 TRAV20A0A0B4J274 112 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 TMEM269A0A1B0GVZ9 245 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 A0A1W2PQL4 384 aaPredicted RBP9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 SLC22A31A6NKX4 558 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 ANKRD30BLA7E2S9 258 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 CEACAM18A8MTB9 384 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 ENTPD6O75354 484 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 SRSF10O75494 262 aaKnown RBP9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 APOC1P02654 83 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 HTR1FP30939 366 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 MDH2P40926 338 aaKnown RBP9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 ALDH3A2P51648 485 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 CSNK2BP67870 215 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 ELF3P78545 371 aaPredicted RBP9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 POU4F2Q12837 409 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 OR8B8Q15620 311 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 TMEM155Q4W5P6 130 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 SFRP4Q6FHJ7 346 aaPredicted RBP9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 KCTD18Q6PI47 426 aaPredicted RBP9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 GID4Q8IVV7 300 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 C11orf53Q8IXP5 236 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 ZNF679Q8IYX0 411 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 CELF2-AS1Q8N7Q2 184 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 OR8J1Q8NGP2 316 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 Q8TCH9 128 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 SEH1LQ96EE3 360 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 HRASLS5Q96KN8 279 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 RAB3IPQ96QF0 476 aaPredicted RBP9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 PAPOLGQ9BWT3 736 aaKnown RBP9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 TMPRSS13Q9BYE2 586 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 PBOV1Q9GZY1 135 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 SLC22A4Q9H015 551 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 OPA3Q9H6K4 179 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 C1orf123Q9NWV4 160 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 LPAR3Q9UBY5 353 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 ENOPH1Q9UHY7 261 aa9.7□□□□□ -0.86
CCDC88C-208ENST00000554165 A6NLC8 198 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 ZNF850A8MQ14 1090 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 ZNF670-ZNF695F2Z2N8 137 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 F5H0A9 414 aaPredicted RBP9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 TRAPPC2LH3BP13 241 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 PTBP3O95758 552 aaKnown RBP9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 WNT2P09544 360 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 EGR1P18146 543 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 ADRA2CP18825 462 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 THBS2P35442 1172 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 SRP14P37108 136 aaKnown RBP9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 DDOSTP39656 456 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 RIDAP52758 137 aaKnown RBP9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 CDC42P60953 191 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 PRDX4Q13162 271 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 LCE2DQ5TA82 110 aaPredicted RBP9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 DEGS2Q6QHC5 323 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 KLHL36Q8N4N3 616 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 SPICQ8N5J4 248 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 OR10H4Q8NGA5 316 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 OR8S1Q8NH09 359 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 OR51E1Q8TCB6 317 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 ASB17Q8WXJ9 295 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 FAM71F1Q96KD3 344 aaPredicted RBP9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 MROQ9BYG7 248 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 NIPAL2Q9H841 368 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 SP140LQ9H930 580 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 FN3KRPQ9HA64 309 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 CLN6Q9NWW5 311 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 IMPAD1Q9NX62 359 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 STAB1Q9NY15 2570 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 HAO2Q9NYQ3 351 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 RNF7Q9UBF6 113 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 WARS2Q9UGM6 360 aaKnown RBP9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 OPN4Q9UHM6 478 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 GTF2A1LQ9UNN4 478 aa9.69□□□□□ -0.86
CCDC88C-208ENST00000554165 SLC22A13Q9Y226 551 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms