RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 LOC110117498-PIK3R3F6TDL0 507 aa11.94□□□□□ -0.5
PTCH1-226ENST00000553011 LY6G6DO95868 133 aa11.94□□□□□ -0.5
PTCH1-226ENST00000553011 TTRP02766 147 aa11.94□□□□□ -0.5
PTCH1-226ENST00000553011 CFL1P23528 166 aaKnown RBP11.94□□□□□ -0.5
PTCH1-226ENST00000553011 ACKR3P25106 362 aa11.94□□□□□ -0.5
PTCH1-226ENST00000553011 AQP4P55087 323 aa11.94□□□□□ -0.5
PTCH1-226ENST00000553011 TMEM33P57088 247 aa11.94□□□□□ -0.5
PTCH1-226ENST00000553011 ACTC1P68032 377 aa11.94□□□□□ -0.5
PTCH1-226ENST00000553011 ACTA1P68133 377 aa11.94□□□□□ -0.5
PTCH1-226ENST00000553011 KRTAP1-1Q07627 177 aa11.94□□□□□ -0.5
PTCH1-226ENST00000553011 OR8G1Q15617 311 aa11.94□□□□□ -0.5
PTCH1-226ENST00000553011 OR8B8Q15620 311 aa11.94□□□□□ -0.5
PTCH1-226ENST00000553011 HFEQ30201 348 aa11.94□□□□□ -0.5
PTCH1-226ENST00000553011 LIPNQ5VXI9 398 aa11.94□□□□□ -0.5
PTCH1-226ENST00000553011 ACBD7Q8N6N7 88 aa11.94□□□□□ -0.5
PTCH1-226ENST00000553011 ZNF540Q8NDQ6 660 aa11.94□□□□□ -0.5
PTCH1-226ENST00000553011 OR51E1Q8TCB6 317 aa11.94□□□□□ -0.5
PTCH1-226ENST00000553011 ADAT1Q9BUB4 502 aaKnown RBP11.94□□□□□ -0.5
PTCH1-226ENST00000553011 PPP1R3EQ9H7J1 279 aa11.94□□□□□ -0.5
PTCH1-226ENST00000553011 G6PC2Q9NQR9 355 aa11.94□□□□□ -0.5
PTCH1-226ENST00000553011 MRPL15Q9P015 296 aaKnown RBP11.94□□□□□ -0.5
PTCH1-226ENST00000553011 GNG8Q9UK08 70 aa11.94□□□□□ -0.5
PTCH1-226ENST00000553011 OR52A1Q9UKL2 312 aa11.94□□□□□ -0.5
PTCH1-226ENST00000553011 MYRFQ9Y2G1 1151 aa11.94□□□□□ -0.5
PTCH1-226ENST00000553011 RPL36Q9Y3U8 105 aaKnown RBP11.94□□□□□ -0.5
PTCH1-226ENST00000553011 A0A0U1RQV5 110 aa11.93□□□□□ -0.5
PTCH1-226ENST00000553011 LRP5LA4QPB2 252 aa11.93□□□□□ -0.5
PTCH1-226ENST00000553011 H0YAE9 185 aa11.93□□□□□ -0.5
PTCH1-226ENST00000553011 WNT9BO14905 357 aa11.93□□□□□ -0.5
PTCH1-226ENST00000553011 SULT1C4O75897 302 aa11.93□□□□□ -0.5
PTCH1-226ENST00000553011 ATP6V1G2O95670 118 aa11.93□□□□□ -0.5
PTCH1-226ENST00000553011 TNFRSF1AP19438 455 aa11.93□□□□□ -0.5
PTCH1-226ENST00000553011 DDOSTP39656 456 aa11.93□□□□□ -0.5
PTCH1-226ENST00000553011 PSMB10P40306 273 aa11.93□□□□□ -0.5
PTCH1-226ENST00000553011 SRP9P49458 86 aaKnown RBP11.93□□□□□ -0.5
PTCH1-226ENST00000553011 MAB21L1Q13394 359 aa11.93□□□□□ -0.5
PTCH1-226ENST00000553011 IL18R1Q13478 541 aa11.93□□□□□ -0.5
PTCH1-226ENST00000553011 TMEM249Q2WGJ8 235 aa11.93□□□□□ -0.5
PTCH1-226ENST00000553011 AVPI1Q5T686 147 aa11.93□□□□□ -0.5
PTCH1-226ENST00000553011 BCL2L15Q5TBC7 163 aa11.93□□□□□ -0.5
PTCH1-226ENST00000553011 CLEC9AQ6UXN8 241 aa11.93□□□□□ -0.5
PTCH1-226ENST00000553011 Q71RC1 249 aaPredicted RBP11.93□□□□□ -0.5
PTCH1-226ENST00000553011 LHFPL3Q86UP9 236 aa11.93□□□□□ -0.5
PTCH1-226ENST00000553011 RORBQ92753 470 aa11.93□□□□□ -0.5
PTCH1-226ENST00000553011 TFAP2CQ92754 450 aa11.93□□□□□ -0.5
PTCH1-226ENST00000553011 SLC22A4Q9H015 551 aa11.93□□□□□ -0.5
PTCH1-226ENST00000553011 NARFLQ9H6Q4 476 aa11.93□□□□□ -0.5
PTCH1-226ENST00000553011 GPR84Q9NQS5 396 aa11.93□□□□□ -0.5
PTCH1-226ENST00000553011 ACOXLQ9NUZ1 547 aa11.93□□□□□ -0.5
PTCH1-226ENST00000553011 MRPS18AQ9NVS2 196 aaKnown RBP11.93□□□□□ -0.5
PTCH1-226ENST00000553011 SLC22A13Q9Y226 551 aa11.93□□□□□ -0.5
PTCH1-226ENST00000553011 RHBDD3Q9Y3P4 386 aa11.93□□□□□ -0.5
PTCH1-226ENST00000553011 PCDHGB1Q9Y5G3 927 aa11.93□□□□□ -0.5
PTCH1-226ENST00000553011 C2CD3Q4AC94 2353 aa11.93□□□□□ -0.5
PTCH1-226ENST00000553011 ANKRD30BLA7E2S9 258 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 CLDN25C9JDP6 229 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 FAM20BO75063 409 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 FADS2O95864 444 aaKnown RBP11.92□□□□□ -0.5
PTCH1-226ENST00000553011 IGLV3-1P01715 115 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 IGHA1P01876 353 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 TACSTD2P09758 323 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 CD200P41217 278 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 OR12D2P58182 307 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 MVKQ03426 396 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 RAB40BQ12829 278 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 RIPK1Q13546 671 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 CDONQ4KMG0 1287 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 C6orf52Q5T4I8 152 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 PRAMEF6Q5VXH4 476 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 LAIR2Q6ISS4 152 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 FAM220AQ7Z4H9 259 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 MOGAT3Q86VF5 341 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 COMMD2Q86X83 199 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 CATSPERDQ86XM0 798 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 ELMOD2Q8IZ81 293 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 C8orf59Q8N0T1 100 aaPredicted RBP11.92□□□□□ -0.5
PTCH1-226ENST00000553011 CSNK2A3Q8NEV1 391 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 OR52I1Q8NGK6 324 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 ZNF420Q8TAQ5 688 aaPredicted RBP11.92□□□□□ -0.5
PTCH1-226ENST00000553011 RNF166Q96A37 237 aaPredicted RBP11.92□□□□□ -0.5
PTCH1-226ENST00000553011 FAM71F1Q96KD3 344 aaPredicted RBP11.92□□□□□ -0.5
PTCH1-226ENST00000553011 MOB1AQ9H8S9 216 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 GCM1Q9NP62 436 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 TMEM106BQ9NUM4 274 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 ZNF391Q9UJN7 358 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 PPP1R3CQ9UQK1 317 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 WIPI2Q9Y4P8 454 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 SNX5Q9Y5X3 404 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 HSPE1-MOB4S4R3N1 261 aa11.92□□□□□ -0.5
PTCH1-226ENST00000553011 NIPBLQ6KC79 2804 aaeCLIP11.91□□□□□ -0.5
PTCH1-226ENST00000553011 P2RY10O00398 339 aa11.91□□□□□ -0.5
PTCH1-226ENST00000553011 GMDSO60547 372 aa11.91□□□□□ -0.5
PTCH1-226ENST00000553011 IL2RGP31785 369 aa11.91□□□□□ -0.5
PTCH1-226ENST00000553011 PMELP40967 661 aa11.91□□□□□ -0.5
PTCH1-226ENST00000553011 GALEQ14376 348 aa11.91□□□□□ -0.5
PTCH1-226ENST00000553011 MPPED2Q15777 294 aa11.91□□□□□ -0.5
PTCH1-226ENST00000553011 ODF4Q2M2E3 257 aa11.91□□□□□ -0.5
PTCH1-226ENST00000553011 KLHL22Q53GT1 634 aa11.91□□□□□ -0.5
PTCH1-226ENST00000553011 ZNF649Q9BS31 505 aa11.91□□□□□ -0.5
PTCH1-226ENST00000553011 ALG8Q9BVK2 526 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms