RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 HUWE1Q7Z6Z7 4374 aaKnown RBP5.27□□□□□ -1.57
LIMA1-204ENST00000549064 TRBV5-7A0A0A0MS05 114 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 PRSS51A0A1B0GVH4 220 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 A0A1B0GWA3 101 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 A0A1W2PPM1 405 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 DPPA5A6NC42 116 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 E9PQ18 207 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 RHODO00212 210 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 PLIN3O60664 434 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 ENTPD5O75356 428 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 FCN3O75636 299 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 BCHEP06276 602 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 FBP1P09467 338 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 PGA4P0DJD7 388 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 PGA3P0DJD8 388 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 ADORA3P0DMS8 318 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 CPA3P15088 417 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 MC5RP33032 325 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 CDKN2CP42773 168 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 CRATP43155 626 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 GNG11P61952 73 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 ERVK-25P63136 954 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 PSG4Q00888 419 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 FOXE3Q13461 319 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 CASP8Q14790 479 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 ALG10Q5BKT4 473 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 ALG10BQ5I7T1 473 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 ENTPD8Q5MY95 495 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 TRAT1Q6PIZ9 186 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 VMO1Q7Z5L0 202 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 C10orf107Q8IVU9 208 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 C10orf53Q8N6V4 93 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 CCDC63Q8NA47 563 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 OR8J2Q8NGG1 315 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 OR4C13Q8NGP0 309 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 OR6X1Q8NH79 312 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 VANGL1Q8TAA9 524 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-204ENST00000549064 MCHR2Q969V1 340 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 CMBLQ96DG6 245 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 ZNF607Q96SK3 696 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 ASCL2Q99929 193 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 WNT5BQ9H1J7 359 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 MMADHCQ9H3L0 296 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-204ENST00000549064 CCNB1IP1Q9NPC3 277 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 MRPL39Q9NYK5 338 aaKnown RBP5.27□□□□□ -1.57
LIMA1-204ENST00000549064 RPS6KB2Q9UBS0 482 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 DCDC2Q9UHG0 476 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 RPUSD1Q9UJJ7 312 aaKnown RBP5.27□□□□□ -1.57
LIMA1-204ENST00000549064 TMCC3Q9ULS5 477 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 RAP2CQ9Y3L5 183 aa5.27□□□□□ -1.57
LIMA1-204ENST00000549064 A0A087WUV0 522 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-204ENST00000549064 H3BSA7 217 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 H3BUX3 64 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 SURF4O15260 269 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 OGG1O15527 345 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 OR10H3O60404 316 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 LIPFP07098 398 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 FGF4P08620 206 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 KITLGP21583 273 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 PAX6P26367 422 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 EGFEM1PQ0D2K5 195 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 KLRD1Q13241 179 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 SPANXN4Q5MJ08 99 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 C6orf141Q5SZD1 244 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 CEP85LQ5SZL2 805 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 C11orf88Q6PI97 169 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 C5orf46Q6UWT4 87 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 UNQ6126/PRO20091Q6UXV3 157 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 MEPCEQ7L2J0 689 aaKnown RBP5.26□□□□□ -1.57
LIMA1-204ENST00000549064 ZER1Q7Z7L7 766 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 COMTD1Q86VU5 262 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 FGFRL1Q8N441 504 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 PARP16Q8N5Y8 322 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 DPP10Q8N608 796 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 SPERTQ8NA61 448 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 OR5R1Q8NH85 324 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 ACMSDQ8TDX5 336 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 NABP1Q96AH0 204 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 TUBGCP3Q96CW5 907 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 RRNAD1Q96FB5 475 aaKnown RBP5.26□□□□□ -1.57
LIMA1-204ENST00000549064 SLC25A44Q96H78 314 aaPredicted RBP5.26□□□□□ -1.57
LIMA1-204ENST00000549064 C4orf45Q96LM5 186 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 C20orf173Q96LM9 149 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 CDRT15Q96T59 188 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 MEAF6Q9HAF1 191 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 C12orf10Q9HB07 376 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 SIRT7Q9NRC8 400 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 MAN2C1Q9NTJ4 1040 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 TBK1Q9UHD2 729 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 STARD9Q9P2P6 4700 aa5.26□□□□□ -1.57
LIMA1-204ENST00000549064 IGKV1D-43A0A0B4J1Z2 117 aa5.25□□□□□ -1.57
LIMA1-204ENST00000549064 F5H5P2 479 aa5.25□□□□□ -1.57
LIMA1-204ENST00000549064 NPFFO15130 113 aa5.25□□□□□ -1.57
LIMA1-204ENST00000549064 MLNRO43193 412 aa5.25□□□□□ -1.57
LIMA1-204ENST00000549064 ZSCAN12O43309 604 aa5.25□□□□□ -1.57
LIMA1-204ENST00000549064 RNF13O43567 381 aa5.25□□□□□ -1.57
LIMA1-204ENST00000549064 CHST1O43916 411 aa5.25□□□□□ -1.57
LIMA1-204ENST00000549064 OR6A2O95222 327 aa5.25□□□□□ -1.57
LIMA1-204ENST00000549064 SLC2A10O95528 541 aa5.25□□□□□ -1.57
LIMA1-204ENST00000549064 PAHP00439 452 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms