RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 H3F3CQ6NXT2 135 aa9.71□□□□□ -0.85
CUX1-212ENST00000547394 HDDC2Q7Z4H3 204 aa9.71□□□□□ -0.85
CUX1-212ENST00000547394 C20orf196Q8IYI0 205 aa9.71□□□□□ -0.85
CUX1-212ENST00000547394 GPR137CQ8N3F9 429 aa9.71□□□□□ -0.85
CUX1-212ENST00000547394 NTNG2Q96CW9 530 aa9.71□□□□□ -0.85
CUX1-212ENST00000547394 ADGRG7Q96K78 797 aa9.71□□□□□ -0.85
CUX1-212ENST00000547394 SLC6A7Q99884 636 aa9.71□□□□□ -0.85
CUX1-212ENST00000547394 C7orf50Q9BRJ6 194 aaKnown RBP9.71□□□□□ -0.85
CUX1-212ENST00000547394 DLL4Q9NR61 685 aa9.71□□□□□ -0.85
CUX1-212ENST00000547394 EIF3KQ9UBQ5 218 aaKnown RBP9.71□□□□□ -0.85
CUX1-212ENST00000547394 ZNF230Q9UIE0 474 aaPredicted RBP9.71□□□□□ -0.85
CUX1-212ENST00000547394 LOC102725191A0A1B0GVB3 256 aa9.71□□□□□ -0.86
CUX1-212ENST00000547394 MEGF11A6BM72 1044 aa9.71□□□□□ -0.86
CUX1-212ENST00000547394 ZNF780AO75290 641 aaPredicted RBP9.71□□□□□ -0.86
CUX1-212ENST00000547394 LCATP04180 440 aa9.71□□□□□ -0.86
CUX1-212ENST00000547394 AKAIN1P0CW23 69 aa9.71□□□□□ -0.86
CUX1-212ENST00000547394 GABRA1P14867 456 aa9.71□□□□□ -0.86
CUX1-212ENST00000547394 SERPINA2P20848 420 aa9.71□□□□□ -0.86
CUX1-212ENST00000547394 CNR1P21554 472 aa9.71□□□□□ -0.86
CUX1-212ENST00000547394 ZNF84P51523 738 aa9.71□□□□□ -0.86
CUX1-212ENST00000547394 GFRA1P56159 465 aa9.71□□□□□ -0.86
CUX1-212ENST00000547394 ZNF239Q16600 458 aaKnown RBP9.71□□□□□ -0.86
CUX1-212ENST00000547394 TSPO2Q5TGU0 170 aa9.71□□□□□ -0.86
CUX1-212ENST00000547394 CD276Q5ZPR3 534 aa9.71□□□□□ -0.86
CUX1-212ENST00000547394 TUSC5Q8IXB3 177 aa9.71□□□□□ -0.86
CUX1-212ENST00000547394 MUC20Q8N307 709 aaPredicted RBP9.71□□□□□ -0.86
CUX1-212ENST00000547394 OR14K1Q8NGZ2 314 aa9.71□□□□□ -0.86
CUX1-212ENST00000547394 TTTY12Q9BZ98 90 aa9.71□□□□□ -0.86
CUX1-212ENST00000547394 POFUT1Q9H488 388 aa9.71□□□□□ -0.86
CUX1-212ENST00000547394 ING4Q9UNL4 249 aa9.71□□□□□ -0.86
CUX1-212ENST00000547394 LOC390937A0A1W2PQ73 354 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 C3orf80F5H4A9 247 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 SGCEO43556 437 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 RAD51DO75771 328 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 VAMP5O95183 116 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 CYB5AP00167 134 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 LPLP06858 475 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 ZNF806P0C7X5 589 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 DNASE1P24855 282 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 HTR5AP47898 357 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 MRPS10P82664 201 aaKnown RBP9.7□□□□□ -0.86
CUX1-212ENST00000547394 QRFPP83859 136 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 CAMK2BQ13554 666 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 PDCD1Q15116 288 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 PLAC9Q5JTB6 97 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 C10orf128Q5T292 105 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 DCAF12L2Q5VW00 463 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 BRICD5Q6PL45 260 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 GLDNQ6ZMI3 551 aaPredicted RBP9.7□□□□□ -0.86
CUX1-212ENST00000547394 FAM219AQ8IW50 185 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 ARMC10Q8N2F6 343 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 NKAIN3Q8N8D7 197 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 THRSPQ92748 146 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 SNAPC3Q92966 411 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 ZPBPQ9BS86 351 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 ZNF436Q9C0F3 470 aaPredicted RBP9.7□□□□□ -0.86
CUX1-212ENST00000547394 OR51B6Q9H340 312 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 ZNF703Q9H7S9 590 aaPredicted RBP9.7□□□□□ -0.86
CUX1-212ENST00000547394 KCNK7Q9Y2U2 307 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 KIAA1549Q9HCM3 1950 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 GJE1A6NN92 205 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 ZNF736B4DX44 427 aaPredicted RBP9.7□□□□□ -0.86
CUX1-212ENST00000547394 G3V3Q6 166 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 NKX2-8O15522 239 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 SPRY1O43609 319 aaPredicted RBP9.7□□□□□ -0.86
CUX1-212ENST00000547394 ZNF205O95201 554 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 PMP2P02689 132 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 CSF1P09603 554 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 FCGR2AP12318 317 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 ZNF81P51508 661 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 DNM1P46Q6ZS02 220 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.7□□□□□ -0.86
CUX1-212ENST00000547394 SKA3Q8IX90 412 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 TMEM251Q8N6I4 163 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 SGK3Q96BR1 496 aa9.7□□□□□ -0.86
CUX1-212ENST00000547394 C1orf147Q96MC9 270 aaPredicted RBP9.7□□□□□ -0.86
CUX1-212ENST00000547394 MEIKINA0A087WXM9 373 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 FAM230AA0A1W2PPH8 454 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 TERTO14746 1132 aaKnown RBP9.69□□□□□ -0.86
CUX1-212ENST00000547394 HRH1P35367 487 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 HTR2BP41595 481 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 LSM6P62312 80 aaKnown RBP9.69□□□□□ -0.86
CUX1-212ENST00000547394 GRB2P62993 217 aaKnown RBP9.69□□□□□ -0.86
CUX1-212ENST00000547394 PSG4Q00888 419 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 RBMS2Q15434 407 aaKnown RBP9.69□□□□□ -0.86
CUX1-212ENST00000547394 KISS1Q15726 138 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 KCNMB1Q16558 191 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 CRIP3Q6Q6R5 217 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 ZNF584Q8IVC4 421 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 BPIFB2Q8N4F0 458 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 OR8H1Q8NGG4 311 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 ADAMTS17Q8TE56 1095 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 ARHGAP5-AS1Q96IT6 56 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 FOXB1Q99853 325 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 LPAR5Q9H1C0 372 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 C12orf49Q9H741 205 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 TMEM38BQ9NVV0 291 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 BOKQ9UMX3 212 aaPredicted RBP9.69□□□□□ -0.86
CUX1-212ENST00000547394 METTL21EPA6NDL7 271 aa9.69□□□□□ -0.86
CUX1-212ENST00000547394 CCSO14618 274 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms