RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 SPIBQ01892 262 aa11.15□□□□□ -0.62
SS18-204ENST00000539244 GUCA2AQ02747 115 aa11.15□□□□□ -0.62
SS18-204ENST00000539244 TSPAN31Q12999 210 aa11.15□□□□□ -0.62
SS18-204ENST00000539244 MICBQ29980 383 aa11.15□□□□□ -0.62
SS18-204ENST00000539244 DUX4L9Q6RFH8 374 aaPredicted RBP11.15□□□□□ -0.62
SS18-204ENST00000539244 SLC36A1Q7Z2H8 476 aa11.15□□□□□ -0.62
SS18-204ENST00000539244 DCXRQ7Z4W1 244 aa11.15□□□□□ -0.62
SS18-204ENST00000539244 WDR86Q86TI4 376 aa11.15□□□□□ -0.62
SS18-204ENST00000539244 PDZD9Q8IXQ8 264 aa11.15□□□□□ -0.62
SS18-204ENST00000539244 FGFRL1Q8N441 504 aa11.15□□□□□ -0.62
SS18-204ENST00000539244 OR2T4Q8NH00 348 aa11.15□□□□□ -0.62
SS18-204ENST00000539244 C8orf46Q8TAG6 207 aa11.15□□□□□ -0.62
SS18-204ENST00000539244 ZNRF4Q8WWF5 429 aa11.15□□□□□ -0.62
SS18-204ENST00000539244 C12orf43Q96C57 262 aaKnown RBP11.15□□□□□ -0.62
SS18-204ENST00000539244 KCNJ15Q99712 375 aa11.15□□□□□ -0.62
SS18-204ENST00000539244 SPAG4Q9NPE6 437 aa11.15□□□□□ -0.62
SS18-204ENST00000539244 DUX4Q9UBX2 424 aa11.15□□□□□ -0.62
SS18-204ENST00000539244 PRPF19Q9UMS4 504 aaKnown RBP11.15□□□□□ -0.62
SS18-204ENST00000539244 COMMD3-BMI1R4GMX3 469 aa11.15□□□□□ -0.62
SS18-204ENST00000539244 IGHV3OR15-7A0A075B7D8 119 aa11.14□□□□□ -0.63
SS18-204ENST00000539244 BTBD17A6NE02 478 aa11.14□□□□□ -0.63
SS18-204ENST00000539244 CCDC22O60826 627 aa11.14□□□□□ -0.63
SS18-204ENST00000539244 TIPRLO75663 272 aa11.14□□□□□ -0.63
SS18-204ENST00000539244 PYCR1P32322 319 aa11.14□□□□□ -0.63
SS18-204ENST00000539244 TGM4P49221 684 aa11.14□□□□□ -0.63
SS18-204ENST00000539244 PSME3P61289 254 aa11.14□□□□□ -0.63
SS18-204ENST00000539244 POU4F2Q12837 409 aa11.14□□□□□ -0.63
SS18-204ENST00000539244 WDR38Q5JTN6 314 aa11.14□□□□□ -0.63
SS18-204ENST00000539244 SLC35F1Q5T1Q4 408 aa11.14□□□□□ -0.63
SS18-204ENST00000539244 ATPAF1Q5TC12 328 aaPredicted RBP11.14□□□□□ -0.63
SS18-204ENST00000539244 RPL13AP3Q6NVV1 102 aa11.14□□□□□ -0.63
SS18-204ENST00000539244 WDR82Q6UXN9 313 aa11.14□□□□□ -0.63
SS18-204ENST00000539244 C1QL4Q86Z23 238 aa11.14□□□□□ -0.63
SS18-204ENST00000539244 GALNT4Q8N4A0 578 aa11.14□□□□□ -0.63
SS18-204ENST00000539244 PROKR2Q8NFJ6 384 aa11.14□□□□□ -0.63
SS18-204ENST00000539244 OR1M1Q8NGA1 313 aa11.14□□□□□ -0.63
SS18-204ENST00000539244 OR5R1Q8NH85 324 aa11.14□□□□□ -0.63
SS18-204ENST00000539244 FAM110DQ8TAY7 271 aaPredicted RBP11.14□□□□□ -0.63
SS18-204ENST00000539244 LRRC29Q8WV35 223 aa11.14□□□□□ -0.63
SS18-204ENST00000539244 PYURFQ96I23 114 aa11.14□□□□□ -0.63
SS18-204ENST00000539244 CCL13Q99616 98 aa11.14□□□□□ -0.63
SS18-204ENST00000539244 COPS4Q9BT78 406 aa11.14□□□□□ -0.63
SS18-204ENST00000539244 DCTN5Q9BTE1 182 aa11.14□□□□□ -0.63
SS18-204ENST00000539244 NSRP1Q9H0G5 558 aaKnown RBP11.14□□□□□ -0.63
SS18-204ENST00000539244 TLNRD1Q9H1K6 362 aa11.14□□□□□ -0.63
SS18-204ENST00000539244 SEMA6AQ9H2E6 1030 aa11.14□□□□□ -0.63
SS18-204ENST00000539244 ARGLU1Q9NWB6 273 aaPredicted RBP11.14□□□□□ -0.63
SS18-204ENST00000539244 ADA2Q9NZK5 511 aa11.14□□□□□ -0.63
SS18-204ENST00000539244 ONECUT1Q9UBC0 465 aa11.14□□□□□ -0.63
SS18-204ENST00000539244 ZNF281Q9Y2X9 895 aa11.14□□□□□ -0.63
SS18-204ENST00000539244 ZNF816-ZNF321PA0A0X1KG74 233 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 TVP23AA6NH52 213 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 ANKRD30BLA7E2S9 258 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 ZNF878C9JN71 531 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 RNASEK-C17orf49H0YIS7 233 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 NPFFO15130 113 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 SLC2A1P11166 492 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 AMY2BP19961 511 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 EEF1B2P24534 225 aaKnown RBP11.13□□□□□ -0.63
SS18-204ENST00000539244 PRKXP51817 358 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 ELF3P78545 371 aaPredicted RBP11.13□□□□□ -0.63
SS18-204ENST00000539244 FAM3AP98173 230 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 FBLN7Q53RD9 439 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 TEX30Q5JUR7 227 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 PGBD2Q6P3X8 592 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 LYPD4Q6UWN0 246 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 C1orf122Q6ZSJ8 110 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 SLC16A9Q7RTY1 509 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 CMTM4Q8IZR5 234 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 FAM216BQ8N7L0 139 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 Q8N7P7 452 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 CYB561A3Q8NBI2 242 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 OR8S1Q8NH09 359 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 GNPDA2Q8TDQ7 276 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 TNFRSF14Q92956 283 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 SLAMF6Q96DU3 332 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 DNTTIP1Q9H147 329 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 SIRT7Q9NRC8 400 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 IL20Q9NYY1 176 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 FBLN5Q9UBX5 448 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 CDH10Q9Y6N8 788 aa11.13□□□□□ -0.63
SS18-204ENST00000539244 ACOT8O14734 319 aa11.12□□□□□ -0.63
SS18-204ENST00000539244 NDUFB3O43676 98 aa11.12□□□□□ -0.63
SS18-204ENST00000539244 GMNNO75496 209 aa11.12□□□□□ -0.63
SS18-204ENST00000539244 CSF1P09603 554 aa11.12□□□□□ -0.63
SS18-204ENST00000539244 RRM2P31350 389 aa11.12□□□□□ -0.63
SS18-204ENST00000539244 NAA10P41227 235 aaPredicted RBP11.12□□□□□ -0.63
SS18-204ENST00000539244 ENTPD1P49961 510 aa11.12□□□□□ -0.63
SS18-204ENST00000539244 GRB2P62993 217 aaKnown RBP11.12□□□□□ -0.63
SS18-204ENST00000539244 CSNK2BP67870 215 aa11.12□□□□□ -0.63
SS18-204ENST00000539244 EGR3Q06889 387 aa11.12□□□□□ -0.63
SS18-204ENST00000539244 BEAN1Q3B7T3 259 aa11.12□□□□□ -0.63
SS18-204ENST00000539244 KPRPQ5T749 579 aaPredicted RBP11.12□□□□□ -0.63
SS18-204ENST00000539244 STUMQ69YW2 141 aa11.12□□□□□ -0.63
SS18-204ENST00000539244 DPY19L4Q7Z388 723 aa11.12□□□□□ -0.63
SS18-204ENST00000539244 LNX2Q8N448 690 aa11.12□□□□□ -0.63
SS18-204ENST00000539244 SLC37A3Q8NCC5 494 aa11.12□□□□□ -0.63
SS18-204ENST00000539244 OR52L1Q8NGH7 329 aa11.12□□□□□ -0.63
SS18-204ENST00000539244 NMNAT2Q9BZQ4 307 aa11.12□□□□□ -0.63
SS18-204ENST00000539244 EGLN3Q9H6Z9 239 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms