RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 TMEM27Q9HBJ8 222 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 APOBEC3GQ9HC16 384 aaKnown RBP4.87□□□□□ -1.63
CD44-236ENST00000533222 RAB9BQ9NP90 201 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 DKK4Q9UBT3 224 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 PLEKHB1Q9UF11 243 aaPredicted RBP4.87□□□□□ -1.63
CD44-236ENST00000533222 RAB22AQ9UL26 194 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 AK6Q9Y3D8 172 aaKnown RBP4.87□□□□□ -1.63
CD44-236ENST00000533222 SNX10Q9Y5X0 201 aa4.87□□□□□ -1.63
CD44-236ENST00000533222 ELOVL7A1L3X0 281 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 A1L4Q6 167 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 C7orf77A4D0Y5 90 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 OR5B21A6NL26 309 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 VSTM2BA6NLU5 285 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 FAM157AC9JC47 383 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 F8VVB4 439 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 F8VWA3 439 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 NME4O00746 187 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 SDHDO14521 159 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 LATO43561 262 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 CREBL2O60519 120 aaPredicted RBP4.86□□□□□ -1.63
CD44-236ENST00000533222 NME6O75414 186 aaPredicted RBP4.86□□□□□ -1.63
CD44-236ENST00000533222 RAB36O95755 333 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 HBZP02008 142 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 ZNF19P17023 458 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 EPORP19235 508 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 SAT1P21673 171 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 CYP2F1P24903 491 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 AZGP1P25311 298 aaKnown RBP4.86□□□□□ -1.63
CD44-236ENST00000533222 HOXC9P31274 260 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 KDELR2P33947 212 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 BDKRB1P46663 353 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 OR3A2P47893 321 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 ZNF84P51523 738 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 AKR1C2P52895 323 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 LBX1P52954 281 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 F2RL1P55085 397 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 NDUFA6P56556 154 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 TAS2R19P59542 299 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 TAS2R50P59544 299 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 SNRPD1P62314 119 aaKnown RBP4.86□□□□□ -1.63
CD44-236ENST00000533222 COL10A1Q03692 680 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 CRMP1Q14194 572 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 PSG5Q15238 335 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 ACKR1Q16570 336 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 SGCBQ16585 318 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 ST3GAL2Q16842 350 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 TMEM183BQ1AE95 376 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 AMZ1Q400G9 498 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 ZNF585BQ52M93 769 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 ASPRV1Q53RT3 343 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 AWAT1Q58HT5 328 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 ZNF626Q68DY1 528 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 SLC39A4Q6P5W5 647 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 INO80CQ6PI98 192 aaPredicted RBP4.86□□□□□ -1.63
CD44-236ENST00000533222 CD200R1LQ6Q8B3 271 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 TMEM220Q6QAJ8 160 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 GLDNQ6ZMI3 551 aaPredicted RBP4.86□□□□□ -1.63
CD44-236ENST00000533222 MRGPRGQ86SM5 289 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 ZNF546Q86UE3 836 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 DTX2Q86UW9 622 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 NEIL3Q8TAT5 605 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 ZCCHC10Q8TBK6 192 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 RSPRY1Q96DX4 576 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 ZNF419Q96HQ0 510 aaPredicted RBP4.86□□□□□ -1.63
CD44-236ENST00000533222 CPB2Q96IY4 423 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 BTF3L4Q96K17 158 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 KCTD7Q96MP8 289 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 CACNG6Q9BXT2 260 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 BANF2Q9H503 90 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 LRTM1Q9HBL6 345 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 ZNF160Q9HCG1 818 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 SEMA4BQ9NPR2 832 aaPredicted RBP4.86□□□□□ -1.63
CD44-236ENST00000533222 SEMA4GQ9NTN9 838 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 TAS2R14Q9NYV8 317 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 LRIT1Q9P2V4 623 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 RPS6KB2Q9UBS0 482 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 MRM2Q9UI43 246 aaKnown RBP4.86□□□□□ -1.63
CD44-236ENST00000533222 CD84Q9UIB8 345 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 EMCNQ9ULC0 261 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 FLVCR2Q9UPI3 526 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 ABCA3Q99758 1704 aa4.86□□□□□ -1.63
CD44-236ENST00000533222 ZFC3H1O60293 1989 aaKnown RBP4.85□□□□□ -1.63
CD44-236ENST00000533222 TRAV19A0A0A6YYK7 116 aa4.85□□□□□ -1.63
CD44-236ENST00000533222 A0A0B4J2A0 478 aa4.85□□□□□ -1.63
CD44-236ENST00000533222 LOC102723532A0A0G2JNH3 316 aa4.85□□□□□ -1.63
CD44-236ENST00000533222 A0A1W2PR80 420 aa4.85□□□□□ -1.63
CD44-236ENST00000533222 IRGMA1A4Y4 181 aa4.85□□□□□ -1.63
CD44-236ENST00000533222 TMEM189A5PLL7 270 aa4.85□□□□□ -1.63
CD44-236ENST00000533222 FAM166BA8MTA8 275 aa4.85□□□□□ -1.63
CD44-236ENST00000533222 ZNF705EA8MWA4 302 aaPredicted RBP4.85□□□□□ -1.63
CD44-236ENST00000533222 C9JVG2 144 aa4.85□□□□□ -1.63
CD44-236ENST00000533222 CLDN34H7C241 214 aa4.85□□□□□ -1.63
CD44-236ENST00000533222 APOC4-APOC2K7ER74 178 aa4.85□□□□□ -1.63
CD44-236ENST00000533222 SOX15O60248 233 aa4.85□□□□□ -1.63
CD44-236ENST00000533222 RAMP2O60895 175 aa4.85□□□□□ -1.63
CD44-236ENST00000533222 TOXO94900 526 aa4.85□□□□□ -1.63
CD44-236ENST00000533222 TRUB2O95900 331 aaKnown RBP4.85□□□□□ -1.63
CD44-236ENST00000533222 ACTL6AO96019 429 aa4.85□□□□□ -1.63
CD44-236ENST00000533222 OPN1SWP03999 348 aa4.85□□□□□ -1.63
CD44-236ENST00000533222 CD74P04233 296 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms