RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 IL20Q9NYY1 176 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 PDP1Q9P0J1 537 aaPredicted RBP9.39□□□□□ -0.91
VPS28-214ENST00000531032 KAAG1Q9UBP8 84 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 LYVE1Q9Y5Y7 322 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 TGP01266 2768 aa9.39□□□□□ -0.91
VPS28-214ENST00000531032 IGHV1-69DA0A0B4J2H0 117 aa9.38□□□□□ -0.91
VPS28-214ENST00000531032 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.38□□□□□ -0.91
VPS28-214ENST00000531032 CLPSL1A2RUU4 121 aa9.38□□□□□ -0.91
VPS28-214ENST00000531032 A6NLC8 198 aa9.38□□□□□ -0.91
VPS28-214ENST00000531032 ZNF878C9JN71 531 aa9.38□□□□□ -0.91
VPS28-214ENST00000531032 DVL1O14640 695 aa9.38□□□□□ -0.91
VPS28-214ENST00000531032 XRCC2O43543 280 aa9.38□□□□□ -0.91
VPS28-214ENST00000531032 ECDO95905 644 aaPredicted RBP9.38□□□□□ -0.91
VPS28-214ENST00000531032 IGHV1-69P01742 117 aa9.38□□□□□ -0.91
VPS28-214ENST00000531032 GYPAP02724 150 aa9.38□□□□□ -0.91
VPS28-214ENST00000531032 GRPP07492 148 aa9.38□□□□□ -0.91
VPS28-214ENST00000531032 SLC2A1P11166 492 aa9.38□□□□□ -0.91
VPS28-214ENST00000531032 ENTPD1P49961 510 aa9.38□□□□□ -0.91
VPS28-214ENST00000531032 PRKXP51817 358 aa9.38□□□□□ -0.91
VPS28-214ENST00000531032 TEX30Q5JUR7 227 aa9.38□□□□□ -0.91
VPS28-214ENST00000531032 ZNF770Q6IQ21 691 aaPredicted RBP9.38□□□□□ -0.91
VPS28-214ENST00000531032 RASSF6Q6ZTQ3 369 aa9.38□□□□□ -0.91
VPS28-214ENST00000531032 BTN2A1Q7KYR7 527 aa9.38□□□□□ -0.91
VPS28-214ENST00000531032 LDLRAD3Q86YD5 345 aa9.38□□□□□ -0.91
VPS28-214ENST00000531032 LNX2Q8N448 690 aa9.38□□□□□ -0.91
VPS28-214ENST00000531032 OR51L1Q8NGJ5 315 aa9.38□□□□□ -0.91
VPS28-214ENST00000531032 OR8D4Q8NGM9 314 aa9.38□□□□□ -0.91
VPS28-214ENST00000531032 OR9Q1Q8NGQ5 310 aa9.38□□□□□ -0.91
VPS28-214ENST00000531032 DYRK2Q92630 601 aa9.38□□□□□ -0.91
VPS28-214ENST00000531032 SLAMF6Q96DU3 332 aa9.38□□□□□ -0.91
VPS28-214ENST00000531032 KCNJ15Q99712 375 aa9.38□□□□□ -0.91
VPS28-214ENST00000531032 NMNAT2Q9BZQ4 307 aa9.38□□□□□ -0.91
VPS28-214ENST00000531032 RASSF4Q9H2L5 321 aa9.38□□□□□ -0.91
VPS28-214ENST00000531032 TBC1D23Q9NUY8 699 aa9.38□□□□□ -0.91
VPS28-214ENST00000531032 C14orf119Q9NWQ9 140 aa9.38□□□□□ -0.91
VPS28-214ENST00000531032 SAMHD1Q9Y3Z3 626 aaKnown RBP9.38□□□□□ -0.91
VPS28-214ENST00000531032 hCG_1807616A0A1W2PRN6 198 aa9.37□□□□□ -0.91
VPS28-214ENST00000531032 ZNF593O00488 134 aaPredicted RBP9.37□□□□□ -0.91
VPS28-214ENST00000531032 SPARCP09486 303 aa9.37□□□□□ -0.91
VPS28-214ENST00000531032 MUC1P15941 1255 aaPredicted RBP9.37□□□□□ -0.91
VPS28-214ENST00000531032 FMO3P31513 532 aa9.37□□□□□ -0.91
VPS28-214ENST00000531032 DDOSTP39656 456 aa9.37□□□□□ -0.91
VPS28-214ENST00000531032 SLC25A1P53007 311 aa9.37□□□□□ -0.91
VPS28-214ENST00000531032 CRMP1Q14194 572 aa9.37□□□□□ -0.91
VPS28-214ENST00000531032 TRIM25Q14258 630 aaKnown RBP9.37□□□□□ -0.91
VPS28-214ENST00000531032 MIDNQ504T8 468 aa9.37□□□□□ -0.91
VPS28-214ENST00000531032 BRICD5Q6PL45 260 aa9.37□□□□□ -0.91
VPS28-214ENST00000531032 RHOUQ7L0Q8 258 aa9.37□□□□□ -0.91
VPS28-214ENST00000531032 WDR86Q86TI4 376 aa9.37□□□□□ -0.91
VPS28-214ENST00000531032 C11orf53Q8IXP5 236 aa9.37□□□□□ -0.91
VPS28-214ENST00000531032 ZNF511Q8NB15 262 aa9.37□□□□□ -0.91
VPS28-214ENST00000531032 AQP11Q8NBQ7 271 aa9.37□□□□□ -0.91
VPS28-214ENST00000531032 TBC1D15Q8TC07 691 aa9.37□□□□□ -0.91
VPS28-214ENST00000531032 BCAS4Q8TDM0 211 aa9.37□□□□□ -0.91
VPS28-214ENST00000531032 LHX4Q969G2 390 aa9.37□□□□□ -0.91
VPS28-214ENST00000531032 ASB9Q96DX5 294 aa9.37□□□□□ -0.91
VPS28-214ENST00000531032 THTPAQ9BU02 230 aa9.37□□□□□ -0.91
VPS28-214ENST00000531032 RNPEPL1Q9HAU8 725 aa9.37□□□□□ -0.91
VPS28-214ENST00000531032 CENPMQ9NSP4 180 aa9.37□□□□□ -0.91
VPS28-214ENST00000531032 RPUSD1Q9UJJ7 312 aaKnown RBP9.37□□□□□ -0.91
VPS28-214ENST00000531032 KPTNQ9Y664 436 aa9.37□□□□□ -0.91
VPS28-214ENST00000531032 U3KQV3 271 aa9.37□□□□□ -0.91
VPS28-214ENST00000531032 WNK1Q9H4A3 2382 aa9.37□□□□□ -0.91
VPS28-214ENST00000531032 NOTCH1P46531 2555 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 IGHV3OR15-7A0A075B7D8 119 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 A0A0U1RQK1 487 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 TCRBV5S2A0A599 114 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 DHRS12A0PJE2 317 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 ANKRD30BLA7E2S9 258 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.36□□□□□ -0.91
VPS28-214ENST00000531032 GPR137BO60478 399 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 GASTP01350 101 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 IGHV4-59P01825 116 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 GYPBP06028 91 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 SPI1P17947 270 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 MAGEA2P43356 314 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 IER3P46695 156 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 CX3CR1P49238 355 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 KRTAP10-3P60369 221 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 ARF6P62330 175 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 GRB2P62993 217 aaKnown RBP9.36□□□□□ -0.91
VPS28-214ENST00000531032 FAM3AP98173 230 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 TAF13Q15543 124 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 MICBQ29980 383 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 CDONQ4KMG0 1287 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 DNAL1Q4LDG9 190 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 OR2T5Q6IEZ7 315 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 SLC16A9Q7RTY1 509 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 PRSS45Q7RTY3 260 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 TRPM8Q7Z2W7 1104 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 PIP4P2Q8N4L2 257 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 OR2T29Q8NH02 315 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 OR8S1Q8NH09 359 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 LRRC29Q8WV35 223 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 ST8SIA4Q92187 359 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 CLPTM1LQ96KA5 538 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 DMRTB1Q96MA1 342 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 TOR3AQ9H497 397 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 CNTD2Q9H8S5 307 aa9.36□□□□□ -0.91
VPS28-214ENST00000531032 BAIAP2Q9UQB8 552 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms