RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 OR8B8Q15620 311 aa18.17■□□□□ 0.5
VPS28-208ENST00000527797 UTS2BQ765I0 119 aa18.17■□□□□ 0.5
VPS28-208ENST00000527797 MRPL21Q7Z2W9 205 aaKnown RBP18.17■□□□□ 0.5
VPS28-208ENST00000527797 ZNF101Q8IZC7 436 aa18.17■□□□□ 0.5
VPS28-208ENST00000527797 SAMD12Q8N8I0 201 aa18.17■□□□□ 0.5
VPS28-208ENST00000527797 BORCS5Q969J3 196 aa18.17■□□□□ 0.5
VPS28-208ENST00000527797 ITFG2Q969R8 447 aa18.17■□□□□ 0.5
VPS28-208ENST00000527797 USB1Q9BQ65 265 aaKnown RBP18.17■□□□□ 0.5
VPS28-208ENST00000527797 REPIN1Q9BWE0 567 aaKnown RBP18.17■□□□□ 0.5
VPS28-208ENST00000527797 ACTR6Q9GZN1 396 aa18.17■□□□□ 0.5
VPS28-208ENST00000527797 CHST5Q9GZS9 411 aa18.17■□□□□ 0.5
VPS28-208ENST00000527797 OPA3Q9H6K4 179 aa18.17■□□□□ 0.5
VPS28-208ENST00000527797 LIN7BQ9HAP6 207 aa18.17■□□□□ 0.5
VPS28-208ENST00000527797 PTTG3PQ9NZH4 202 aa18.17■□□□□ 0.5
VPS28-208ENST00000527797 SPATA2Q9UM82 520 aa18.17■□□□□ 0.5
VPS28-208ENST00000527797 MAP1BP46821 2468 aaKnown RBP18.17■□□□□ 0.5
VPS28-208ENST00000527797 INTS1Q8N201 2190 aaKnown RBP18.17■□□□□ 0.5
VPS28-208ENST00000527797 FAM25AB3EWG3 89 aa18.16■□□□□ 0.5
VPS28-208ENST00000527797 FAM25CB3EWG5 89 aa18.16■□□□□ 0.5
VPS28-208ENST00000527797 FAM25GB3EWG6 89 aa18.16■□□□□ 0.5
VPS28-208ENST00000527797 SLC17A2O00624 439 aa18.16■□□□□ 0.5
VPS28-208ENST00000527797 MAGEB3O15480 346 aa18.16■□□□□ 0.5
VPS28-208ENST00000527797 OCMP0CE72 109 aaPredicted RBP18.16■□□□□ 0.5
VPS28-208ENST00000527797 CLDN12P56749 244 aa18.16■□□□□ 0.5
VPS28-208ENST00000527797 TNK1Q13470 666 aa18.16■□□□□ 0.5
VPS28-208ENST00000527797 GK2Q14410 553 aaPredicted RBP18.16■□□□□ 0.5
VPS28-208ENST00000527797 RAB11BQ15907 218 aa18.16■□□□□ 0.5
VPS28-208ENST00000527797 ST3GAL2Q16842 350 aa18.16■□□□□ 0.5
VPS28-208ENST00000527797 JAGN1Q8N5M9 183 aa18.16■□□□□ 0.5
VPS28-208ENST00000527797 OR5H6Q8NGV6 325 aa18.16■□□□□ 0.5
VPS28-208ENST00000527797 CNTNAP3BQ96NU0 1288 aa18.16■□□□□ 0.5
VPS28-208ENST00000527797 CNTNAP3Q9BZ76 1288 aa18.16■□□□□ 0.5
VPS28-208ENST00000527797 ZGRF1Q86YA3 2104 aa18.16■□□□□ 0.5
VPS28-208ENST00000527797 C16orf97H3BN30 126 aa18.16■□□□□ 0.5
VPS28-208ENST00000527797 J3QRK9 145 aa18.16■□□□□ 0.5
VPS28-208ENST00000527797 ICMTO60725 284 aa18.16■□□□□ 0.5
VPS28-208ENST00000527797 ALX3O95076 343 aa18.16■□□□□ 0.5
VPS28-208ENST00000527797 CECR9P0C854 216 aa18.16■□□□□ 0.5
VPS28-208ENST00000527797 DCTN2Q13561 401 aaKnown RBP18.16■□□□□ 0.5
VPS28-208ENST00000527797 PPA1Q15181 289 aa18.16■□□□□ 0.5
VPS28-208ENST00000527797 OR5AS1Q8N127 324 aa18.16■□□□□ 0.5
VPS28-208ENST00000527797 OR52N4Q8NGI2 321 aa18.16■□□□□ 0.5
VPS28-208ENST00000527797 LGALS14Q8TCE9 139 aa18.16■□□□□ 0.5
VPS28-208ENST00000527797 CGGBP1Q9UFW8 167 aaPredicted RBP18.16■□□□□ 0.5
VPS28-208ENST00000527797 ALDOBP05062 364 aa18.15■□□□□ 0.5
VPS28-208ENST00000527797 HTR2CP28335 458 aa18.15■□□□□ 0.5
VPS28-208ENST00000527797 PRSS12P56730 875 aa18.15■□□□□ 0.5
VPS28-208ENST00000527797 SCAND1P57086 179 aa18.15■□□□□ 0.5
VPS28-208ENST00000527797 C1orf100Q5SVJ3 147 aa18.15■□□□□ 0.5
VPS28-208ENST00000527797 ZBTB37Q5TC79 503 aa18.15■□□□□ 0.5
VPS28-208ENST00000527797 FAM166AQ6J272 317 aa18.15■□□□□ 0.5
VPS28-208ENST00000527797 RFPL4BQ6ZWI9 263 aa18.15■□□□□ 0.5
VPS28-208ENST00000527797 LRRC28Q86X40 367 aaPredicted RBP18.15■□□□□ 0.5
VPS28-208ENST00000527797 CDH26Q8IXH8 852 aa18.15■□□□□ 0.5
VPS28-208ENST00000527797 OR6M1Q8NGM8 313 aa18.15■□□□□ 0.5
VPS28-208ENST00000527797 CMTM3Q96MX0 182 aa18.15■□□□□ 0.5
VPS28-208ENST00000527797 SORCS2Q96PQ0 1159 aa18.15■□□□□ 0.5
VPS28-208ENST00000527797 OR51B6Q9H340 312 aa18.15■□□□□ 0.5
VPS28-208ENST00000527797 DSPP15924 2871 aaKnown RBP18.14■□□□□ 0.49
VPS28-208ENST00000527797 IGHV1-18A0A0C4DH31 117 aa18.14■□□□□ 0.49
VPS28-208ENST00000527797 IGKV1-9A0A0C4DH69 117 aa18.14■□□□□ 0.49
VPS28-208ENST00000527797 GGT3PA6NGU5 568 aa18.14■□□□□ 0.49
VPS28-208ENST00000527797 SMPD2O60906 423 aa18.14■□□□□ 0.49
VPS28-208ENST00000527797 HCKP08631 526 aa18.14■□□□□ 0.49
VPS28-208ENST00000527797 ZNF35P13682 527 aa18.14■□□□□ 0.49
VPS28-208ENST00000527797 ELK1P19419 428 aa18.14■□□□□ 0.49
VPS28-208ENST00000527797 CD40LGP29965 261 aa18.14■□□□□ 0.49
VPS28-208ENST00000527797 EVX1P49640 407 aa18.14■□□□□ 0.49
VPS28-208ENST00000527797 PPP5CP53041 499 aa18.14■□□□□ 0.49
VPS28-208ENST00000527797 HLXQ14774 488 aaPredicted RBP18.14■□□□□ 0.49
VPS28-208ENST00000527797 P2RY14Q15391 338 aa18.14■□□□□ 0.49
VPS28-208ENST00000527797 TAB1Q15750 504 aa18.14■□□□□ 0.49
VPS28-208ENST00000527797 C3orf36Q3SXR2 165 aa18.14■□□□□ 0.49
VPS28-208ENST00000527797 CNIH2Q6PI25 160 aa18.14■□□□□ 0.49
VPS28-208ENST00000527797 UNQ6126/PRO20091Q6UXV3 157 aa18.14■□□□□ 0.49
VPS28-208ENST00000527797 LYPD6Q86Y78 171 aa18.14■□□□□ 0.49
VPS28-208ENST00000527797 UQCC2Q9BRT2 126 aa18.14■□□□□ 0.49
VPS28-208ENST00000527797 METTL17Q9H7H0 456 aaPredicted RBP18.14■□□□□ 0.49
VPS28-208ENST00000527797 OR5V1Q9UGF6 321 aa18.14■□□□□ 0.49
VPS28-208ENST00000527797 ETV7Q9Y603 341 aa18.14■□□□□ 0.49
VPS28-208ENST00000527797 ZNF816-ZNF321PA0A0X1KG74 233 aa18.13■□□□□ 0.49
VPS28-208ENST00000527797 FABP12A6NFH5 140 aa18.13■□□□□ 0.49
VPS28-208ENST00000527797 FAM157BP0CG42 384 aa18.13■□□□□ 0.49
VPS28-208ENST00000527797 ZNF93P35789 620 aaPredicted RBP18.13■□□□□ 0.49
VPS28-208ENST00000527797 UCP2P55851 309 aa18.13■□□□□ 0.49
VPS28-208ENST00000527797 UBE2V2Q15819 145 aa18.13■□□□□ 0.49
VPS28-208ENST00000527797 CLVS2Q5SYC1 327 aa18.13■□□□□ 0.49
VPS28-208ENST00000527797 FAM131AQ6UXB0 335 aa18.13■□□□□ 0.49
VPS28-208ENST00000527797 OR10A4Q9H209 315 aa18.13■□□□□ 0.49
VPS28-208ENST00000527797 POFUT1Q9H488 388 aa18.13■□□□□ 0.49
VPS28-208ENST00000527797 NEK6Q9HC98 313 aa18.13■□□□□ 0.49
VPS28-208ENST00000527797 GPR173Q9NS66 373 aa18.13■□□□□ 0.49
VPS28-208ENST00000527797 ZZEF1O43149 2961 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 GMDSO60547 372 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 APOA1P02647 267 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 EIF4EP06730 217 aaKnown RBP18.12■□□□□ 0.49
VPS28-208ENST00000527797 PRF1P14222 555 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 TALDO1P37837 337 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 ZNF83P51522 516 aa18.12■□□□□ 0.49
VPS28-208ENST00000527797 PPP1CBP62140 327 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms