RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 NTNG1Q9Y2I2 539 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 AP3M1Q9Y2T2 418 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SNX24Q9Y343 169 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 FBXO7Q9Y3I1 522 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 MMACHCQ9Y4U1 282 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TIMM22Q9Y584 194 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR51B2Q9Y5P1 312 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 SNX10Q9Y5X0 201 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 ARL5AQ9Y689 179 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 CACNG2Q9Y698 323 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 PCF11O94913 1555 aaKnown RBP0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 WDR7Q9Y4E6 1490 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 NUP160Q12769 1436 aa0.47□□□□□ -2.33
RNU4-54P-201ENST00000516428 TRIP12Q14669 1992 aaPredicted RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 A0A1W2PP64 1363 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 NUP155O75694 1391 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 MSH6P52701 1360 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 AK9Q5TCS8 1911 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZCCHC11Q5TAX3 1644 aaKnown RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 MROH7Q68CQ1 1323 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZBED9Q6R2W3 1325 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 SYNMO15061 1565 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 SMARCA2P51531 1590 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 HMCN1Q96RW7 5635 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 IGLV3-22A0A075B6J6 115 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 IGLV3-10A0A075B6K4 115 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 IGHV4-4A0A075B6R2 117 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 IGHV4-30-2A0A087WSY4 118 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 IGKV1D-8A0A087WSZ0 117 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 A0A087WW49 117 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 IGHV1OR21-1A0A087WYE8 117 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TRAV8-4A0A0B4J246 113 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 IGKV6-21A0A0C4DH24 114 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TRGV8A0A0C4DH27 118 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 IGHV3-38A0A0C4DH36 116 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 A0A0G2JLM5 398 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 CENPVL3A0A0U1RRI6 287 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TEX48A0A1B0GUV7 120 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 LOC105371267A0A1B0GV96 52 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM240AA0A1B0GVK7 77 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TINCRA0A1B0GVN0 87 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 A0A1B0GW55 424 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 DAPL1A0PJW8 107 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 FUOMA2VDF0 154 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 ISPDA4D126 451 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 EFCAB10A6NFE3 127 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 A6NIZ1 184 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 VSTM2BA6NLU5 285 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 CLDN24A6NM45 220 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF726A6NNF4 738 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 SYCE1LA8MT33 242 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 FOXI3A8MTJ6 420 aaPredicted RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 A8MU10 97 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 MPTX1A8MV57 137 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF705EA8MWA4 302 aaPredicted RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 EFCAB9A8MZ26 197 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 KLLNB2CW77 178 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 ERVV-1B6SEH8 477 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TRIM49D1C9J1S8 452 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMEM238C9JI98 176 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 PRAC2D3DTV9 90 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 D6RAR5 112 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 E9PAM4 449 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 F5H5K5 113 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 LINC01619G3V211 115 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 H0Y9J4 135 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 H7C423 109 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 I3L4J1 428 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 K7ENP7 123 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 K7EQD1 137 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 K7EQG2 157 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 M0R1B8 84 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 PSMD12O00232 456 aaPredicted RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 KPNA3O00505 521 aaPredicted RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 CXCR6O00574 342 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 GABRPO00591 440 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 SLC17A2O00624 439 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TAAR5O14804 337 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 MYL12BO14950 172 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 AGPAT2O15120 278 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 PFDN6O15212 129 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 TCAPO15273 167 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 SLC31A2O15432 143 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 PHF1O43189 567 aaPredicted RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 FGF16O43320 207 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 MBTPS2O43462 519 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 HCRTR1O43613 425 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 ENSAO43768 121 aaKnown RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM189A1O60320 539 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 MPZL2O60487 215 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 RAD1O60671 282 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 MAGEC1O60732 1142 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 DPM1O60762 260 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZG16O60844 167 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 CTNSO60931 367 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 ICOSLGO75144 302 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 ENTPD6O75354 484 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 SUPT3HO75486 399 aa0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 GATBO75879 557 aaKnown RBP0.46□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR2B3O76000 313 aa0.46□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 150.9 ms