RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 BANF2Q9H503 90 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 AUNIPQ9H7T9 357 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 ANKRD61A6NGH8 418 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 TNFRSF10CO14798 259 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 PDE6DO43924 150 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 LMX1BO60663 402 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 ABLIM3O94929 683 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 ZBTB25P24278 435 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 DDTP30046 118 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 BRS3P32247 399 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 SLC19A1P41440 591 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 CDC34P49427 236 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 PGGT1BP53609 377 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 APCDD1Q8J025 514 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 MDGA1Q8NFP4 955 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 Q96M85 177 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 TMEM204Q9BSN7 226 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 SMG9Q9H0W8 520 aaKnown RBP10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 TIMM10BQ9Y5J6 103 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 PPP6CO00743 305 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 KLF7O75840 302 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 UTS2O95399 124 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 OTX2P32243 289 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 THBS4P35443 961 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 P2RY1P47900 373 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 EDDM3BP56851 147 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 LGALSLQ3ZCW2 172 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 OR2C3Q8N628 320 aa10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-208ENST00000508501 DOK2O60496 412 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 CTNSO60931 367 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 LDB3O75112 727 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 NAAAQ02083 359 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 TRAT1Q6PIZ9 186 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 MAVSQ7Z434 540 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 MRGPRGQ86SM5 289 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 MZB1Q8WU39 189 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 TM4SF18Q96CE8 201 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 TMEM147Q9BVK8 224 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 S1PR5Q9H228 398 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 GLIPR2Q9H4G4 154 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 HES4Q9HCC6 221 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 SLC17A3O00476 420 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 HIST1H1BP16401 226 aaKnown RBP10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 COL9A3Q14050 684 aaPredicted RBP10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 ZNF345Q14585 488 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 LTC4SQ16873 150 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 DEFB115Q30KQ5 88 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 GRASPQ7Z6J2 395 aaPredicted RBP10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 NAT6Q93015 286 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 SPSB1Q96BD6 273 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 SLAMF6Q96DU3 332 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 LINC00052Q96N35 136 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 OR8B4Q96RC9 309 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 TMPRSS13Q9BYE2 586 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 CTSFQ9UBX1 484 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 TCRBV5S2A0A599 114 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 GSTZ1O43708 216 aaPredicted RBP10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 HES1Q14469 280 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 ZNF542PQ5EBM4 170 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 SFXN1Q9H9B4 322 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 DIRC3C9JPN6 131 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 SEMA4FO95754 770 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 ARR3P36575 388 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 ACAA2P42765 397 aaKnown RBP10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 KIR2DS2P43631 304 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 DUSP8Q13202 625 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 TEX30Q5JUR7 227 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 LIPIQ6XZB0 460 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 Q8IYB0 196 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 C19orf47Q8N9M1 422 aaKnown RBP10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 ZDHHC19Q8WVZ1 309 aaPredicted RBP10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 HSD17B8Q92506 261 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 GALMQ96C23 342 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 ST6GAL2Q96JF0 529 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 SLC46A2Q9BY10 475 aa10.18□□□□□ -0.78
LIMCH1-208ENST00000508501 IAPPP10997 89 aa10.17□□□□□ -0.78
LIMCH1-208ENST00000508501 BTG2P78543 158 aa10.17□□□□□ -0.78
LIMCH1-208ENST00000508501 SLC38A11Q08AI6 406 aa10.17□□□□□ -0.78
LIMCH1-208ENST00000508501 CD226Q15762 336 aa10.17□□□□□ -0.78
LIMCH1-208ENST00000508501 ST3GAL2Q16842 350 aa10.17□□□□□ -0.78
LIMCH1-208ENST00000508501 TUSC1Q2TAM9 212 aa10.17□□□□□ -0.78
LIMCH1-208ENST00000508501 LRRC18Q8N456 261 aa10.17□□□□□ -0.78
LIMCH1-208ENST00000508501 DOK4Q8TEW6 326 aa10.17□□□□□ -0.78
LIMCH1-208ENST00000508501 TMEM230Q96A57 120 aa10.17□□□□□ -0.78
LIMCH1-208ENST00000508501 DOK5Q9P104 306 aa10.17□□□□□ -0.78
LIMCH1-208ENST00000508501 TRBV11-1A0A0K0K1C0 115 aa10.17□□□□□ -0.78
LIMCH1-208ENST00000508501 SH2D7A6NKC9 451 aaPredicted RBP10.17□□□□□ -0.78
LIMCH1-208ENST00000508501 HBZP02008 142 aa10.17□□□□□ -0.78
LIMCH1-208ENST00000508501 DHRS2Q13268 280 aa10.17□□□□□ -0.78
LIMCH1-208ENST00000508501 ZNF385BQ569K4 471 aa10.17□□□□□ -0.78
LIMCH1-208ENST00000508501 LYSMD4Q5XG99 296 aa10.17□□□□□ -0.78
LIMCH1-208ENST00000508501 LINC00346Q8IVM7 164 aa10.17□□□□□ -0.78
LIMCH1-208ENST00000508501 OR52N4Q8NGI2 321 aa10.17□□□□□ -0.78
LIMCH1-208ENST00000508501 TBX15Q96SF7 602 aa10.17□□□□□ -0.78
LIMCH1-208ENST00000508501 HDAC8Q9BY41 377 aa10.17□□□□□ -0.78
LIMCH1-208ENST00000508501 CDCP1Q9H5V8 836 aa10.17□□□□□ -0.78
LIMCH1-208ENST00000508501 IGSF23A1L1A6 192 aa10.17□□□□□ -0.78
LIMCH1-208ENST00000508501 H7C1C5 153 aa10.17□□□□□ -0.78
LIMCH1-208ENST00000508501 M0QZQ0 153 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms