RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 CENPMQ9NSP4 180 aa17.39■□□□□ 0.37
SQSTM1-210ENST00000506042 VPREB3Q9UKI3 123 aa17.39■□□□□ 0.37
SQSTM1-210ENST00000506042 PRPF19Q9UMS4 504 aaKnown RBP17.39■□□□□ 0.37
SQSTM1-210ENST00000506042 A0A0U1RQK1 487 aa17.38■□□□□ 0.37
SQSTM1-210ENST00000506042 TBX1O43435 398 aa17.38■□□□□ 0.37
SQSTM1-210ENST00000506042 KRT36O76013 467 aa17.38■□□□□ 0.37
SQSTM1-210ENST00000506042 DIRAS1O95057 198 aa17.38■□□□□ 0.37
SQSTM1-210ENST00000506042 SPARCP09486 303 aa17.38■□□□□ 0.37
SQSTM1-210ENST00000506042 OTX1P32242 354 aaPredicted RBP17.38■□□□□ 0.37
SQSTM1-210ENST00000506042 SNAI3Q3KNW1 292 aa17.38■□□□□ 0.37
SQSTM1-210ENST00000506042 GLYATL3Q5SZD4 288 aa17.38■□□□□ 0.37
SQSTM1-210ENST00000506042 SLC35F1Q5T1Q4 408 aa17.38■□□□□ 0.37
SQSTM1-210ENST00000506042 NCR3LG1Q68D85 454 aa17.38■□□□□ 0.37
SQSTM1-210ENST00000506042 C8orf82Q6P1X6 216 aaPredicted RBP17.38■□□□□ 0.37
SQSTM1-210ENST00000506042 DCXRQ7Z4W1 244 aa17.38■□□□□ 0.37
SQSTM1-210ENST00000506042 VMO1Q7Z5L0 202 aa17.38■□□□□ 0.37
SQSTM1-210ENST00000506042 FAM90A1Q86YD7 464 aa17.38■□□□□ 0.37
SQSTM1-210ENST00000506042 ZSCAN4Q8NAM6 433 aaPredicted RBP17.38■□□□□ 0.37
SQSTM1-210ENST00000506042 PAPD5Q8NDF8 572 aaKnown RBP17.38■□□□□ 0.37
SQSTM1-210ENST00000506042 CSNK2A3Q8NEV1 391 aa17.38■□□□□ 0.37
SQSTM1-210ENST00000506042 OR52H1Q8NGJ2 320 aa17.38■□□□□ 0.37
SQSTM1-210ENST00000506042 OR2AE1Q8NHA4 323 aa17.38■□□□□ 0.37
SQSTM1-210ENST00000506042 MAP6Q96JE9 813 aa17.38■□□□□ 0.37
SQSTM1-210ENST00000506042 MICU1Q9BPX6 476 aa17.38■□□□□ 0.37
SQSTM1-210ENST00000506042 FAM234AQ9H0X4 552 aa17.38■□□□□ 0.37
SQSTM1-210ENST00000506042 CCDC134Q9H6E4 229 aa17.38■□□□□ 0.37
SQSTM1-210ENST00000506042 SMURF1Q9HCE7 757 aa17.38■□□□□ 0.37
SQSTM1-210ENST00000506042 DNAJB11Q9UBS4 358 aa17.38■□□□□ 0.37
SQSTM1-210ENST00000506042 BAIAP2Q9UQB8 552 aa17.38■□□□□ 0.37
SQSTM1-210ENST00000506042 N6AMT1Q9Y5N5 214 aa17.38■□□□□ 0.37
SQSTM1-210ENST00000506042 C5orf63A6NC05 138 aa17.37■□□□□ 0.37
SQSTM1-210ENST00000506042 IFNGP01579 166 aa17.37■□□□□ 0.37
SQSTM1-210ENST00000506042 ENTPD1P49961 510 aa17.37■□□□□ 0.37
SQSTM1-210ENST00000506042 IL5RAQ01344 420 aa17.37■□□□□ 0.37
SQSTM1-210ENST00000506042 SRSF4Q08170 494 aaKnown RBP17.37■□□□□ 0.37
SQSTM1-210ENST00000506042 CGB2Q6NT52 195 aa17.37■□□□□ 0.37
SQSTM1-210ENST00000506042 PGBD2Q6P3X8 592 aa17.37■□□□□ 0.37
SQSTM1-210ENST00000506042 GCSAMQ8N6F7 178 aa17.37■□□□□ 0.37
SQSTM1-210ENST00000506042 CYB561A3Q8NBI2 242 aa17.37■□□□□ 0.37
SQSTM1-210ENST00000506042 LRRC29Q8WV35 223 aa17.37■□□□□ 0.37
SQSTM1-210ENST00000506042 SLAMF6Q96DU3 332 aa17.37■□□□□ 0.37
SQSTM1-210ENST00000506042 MED30Q96HR3 178 aa17.37■□□□□ 0.37
SQSTM1-210ENST00000506042 NSMCE2Q96MF7 247 aa17.37■□□□□ 0.37
SQSTM1-210ENST00000506042 DNTTIP1Q9H147 329 aa17.37■□□□□ 0.37
SQSTM1-210ENST00000506042 FN3KQ9H479 309 aa17.37■□□□□ 0.37
SQSTM1-210ENST00000506042 C16orf95Q9H693 158 aa17.37■□□□□ 0.37
SQSTM1-210ENST00000506042 IL1RAPQ9NPH3 570 aa17.37■□□□□ 0.37
SQSTM1-210ENST00000506042 GMPR2Q9P2T1 348 aaKnown RBP17.37■□□□□ 0.37
SQSTM1-210ENST00000506042 CDH10Q9Y6N8 788 aa17.37■□□□□ 0.37
SQSTM1-210ENST00000506042 ANXA2P07355 339 aaKnown RBP17.36■□□□□ 0.37
SQSTM1-210ENST00000506042 CSF1P09603 554 aa17.36■□□□□ 0.37
SQSTM1-210ENST00000506042 PRDX6P30041 224 aa17.36■□□□□ 0.37
SQSTM1-210ENST00000506042 GSSP48637 474 aa17.36■□□□□ 0.37
SQSTM1-210ENST00000506042 PRKXP51817 358 aa17.36■□□□□ 0.37
SQSTM1-210ENST00000506042 PROK1P58294 105 aa17.36■□□□□ 0.37
SQSTM1-210ENST00000506042 ASPHD2Q6ICH7 369 aa17.36■□□□□ 0.37
SQSTM1-210ENST00000506042 Q6ZTK2 550 aa17.36■□□□□ 0.37
SQSTM1-210ENST00000506042 FUZQ9BT04 418 aa17.36■□□□□ 0.37
SQSTM1-210ENST00000506042 RTL8AQ9BWD3 113 aa17.36■□□□□ 0.37
SQSTM1-210ENST00000506042 RASSF4Q9H2L5 321 aa17.36■□□□□ 0.37
SQSTM1-210ENST00000506042 RGCCQ9H4X1 137 aa17.36■□□□□ 0.37
SQSTM1-210ENST00000506042 RAB18Q9NP72 206 aa17.36■□□□□ 0.37
SQSTM1-210ENST00000506042 MRPL22Q9NWU5 206 aaKnown RBP17.36■□□□□ 0.37
SQSTM1-210ENST00000506042 V9GYQ6 96 aa17.36■□□□□ 0.37
SQSTM1-210ENST00000506042 LHBP01229 141 aa17.35■□□□□ 0.37
SQSTM1-210ENST00000506042 H2AFXP16104 143 aaPredicted RBP17.35■□□□□ 0.37
SQSTM1-210ENST00000506042 PYCR1P32322 319 aa17.35■□□□□ 0.37
SQSTM1-210ENST00000506042 PCK2Q16822 640 aa17.35■□□□□ 0.37
SQSTM1-210ENST00000506042 SAMD4BQ5PRF9 694 aaKnown RBP17.35■□□□□ 0.37
SQSTM1-210ENST00000506042 H1FXQ92522 213 aaKnown RBP17.35■□□□□ 0.37
SQSTM1-210ENST00000506042 TBC1D23Q9NUY8 699 aa17.35■□□□□ 0.37
SQSTM1-210ENST00000506042 NDE1Q9NXR1 346 aa17.35■□□□□ 0.37
SQSTM1-210ENST00000506042 ZNRD1Q9P1U0 126 aa17.35■□□□□ 0.37
SQSTM1-210ENST00000506042 COMMD3-BMI1R4GMX3 469 aa17.35■□□□□ 0.37
SQSTM1-210ENST00000506042 ACSM1Q08AH1 577 aa17.34■□□□□ 0.37
SQSTM1-210ENST00000506042 TEX30Q5JUR7 227 aa17.34■□□□□ 0.37
SQSTM1-210ENST00000506042 C1orf122Q6ZSJ8 110 aa17.34■□□□□ 0.37
SQSTM1-210ENST00000506042 ZNF826PQ6ZT77 177 aa17.34■□□□□ 0.37
SQSTM1-210ENST00000506042 PDZD9Q8IXQ8 264 aa17.34■□□□□ 0.37
SQSTM1-210ENST00000506042 OR6K6Q8NGW6 343 aa17.34■□□□□ 0.37
SQSTM1-210ENST00000506042 SPSB4Q96A44 273 aa17.34■□□□□ 0.37
SQSTM1-210ENST00000506042 PAPOLGQ9BWT3 736 aaKnown RBP17.34■□□□□ 0.37
SQSTM1-210ENST00000506042 OR10A2Q9H208 303 aa17.34■□□□□ 0.37
SQSTM1-210ENST00000506042 IGHV3OR15-7A0A075B7D8 119 aa17.33■□□□□ 0.36
SQSTM1-210ENST00000506042 A0A1W2PPH5 198 aa17.33■□□□□ 0.36
SQSTM1-210ENST00000506042 A0A1W2PQ09 198 aa17.33■□□□□ 0.36
SQSTM1-210ENST00000506042 TVP23AA6NH52 213 aa17.33■□□□□ 0.36
SQSTM1-210ENST00000506042 TMEM210A6NLX4 147 aa17.33■□□□□ 0.36
SQSTM1-210ENST00000506042 RIIAD1A6NNX1 92 aa17.33■□□□□ 0.36
SQSTM1-210ENST00000506042 NPFFO15130 113 aa17.33■□□□□ 0.36
SQSTM1-210ENST00000506042 TSPAN9O75954 239 aa17.33■□□□□ 0.36
SQSTM1-210ENST00000506042 ZNF3P17036 446 aa17.33■□□□□ 0.36
SQSTM1-210ENST00000506042 CX3CR1P49238 355 aa17.33■□□□□ 0.36
SQSTM1-210ENST00000506042 WDR38Q5JTN6 314 aa17.33■□□□□ 0.36
SQSTM1-210ENST00000506042 RHOUQ7L0Q8 258 aa17.33■□□□□ 0.36
SQSTM1-210ENST00000506042 HIST2H2ABQ8IUE6 130 aaPredicted RBP17.33■□□□□ 0.36
SQSTM1-210ENST00000506042 OR1M1Q8NGA1 313 aa17.33■□□□□ 0.36
SQSTM1-210ENST00000506042 OR9Q1Q8NGQ5 310 aa17.33■□□□□ 0.36
SQSTM1-210ENST00000506042 REEP6Q96HR9 211 aa17.33■□□□□ 0.36
SQSTM1-210ENST00000506042 HIST1H2AAQ96QV6 131 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 101.3 ms