RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	CHRNB3	Q05901	458 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	SNTB2	Q13425	540 aa	Known RBP	3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	CEACAM7	Q14002	265 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	FHL2	Q14192	279 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	OR7A5	Q15622	319 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	SYPL1	Q16563	259 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	CARTPT	Q16568	116 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	ODF4	Q2M2E3	257 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	MAJIN	Q3KP22	176 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	TMEM255A	Q5JRV8	349 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	PHYHD1	Q5SRE7	291 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	ZNF626	Q68DY1	528 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	C16orf87	Q6PH81	154 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	CORO6	Q6QEF8	472 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	CREB3L2	Q70SY1	520 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	C6orf120	Q7Z4R8	191 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	MDP1	Q86V88	176 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	CARM1	Q86X55	608 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	RNF130	Q86XS8	419 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	IFT20	Q8IY31	132 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	ZCCHC24	Q8N2G6	241 aa	Known RBP	3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	ZNF786	Q8N393	782 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	RIBC1	Q8N443	379 aa	Predicted RBP	3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	KLHDC1	Q8N7A1	406 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	ZNF781	Q8N8C0	355 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	ZDHHC22	Q8N966	263 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	EIF1AD	Q8N9N8	165 aa	Known RBP	3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	CCDC63	Q8NA47	563 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	SLC24A4	Q8NFF2	622 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	OR56B1	Q8NGI3	324 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	ZNF563	Q8TA94	476 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	C17orf50	Q8WW18	174 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	RFT1	Q96AA3	541 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	TUBGCP3	Q96CW5	907 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	DDIT4L	Q96D03	193 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	C17orf77	Q96MU5	243 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	TRNT1	Q96Q11	434 aa	Known RBP	3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	OR2M2	Q96R28	347 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	DOK1	Q99704	481 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	RHOXF2	Q9BQY4	288 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	SLC35A5	Q9BS91	424 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	ALKBH7	Q9BT30	221 aa	Predicted RBP	3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	LINC00470	Q9BZP3	86 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	C20orf27	Q9GZN8	174 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	TPK1	Q9H3S4	243 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	METTL17	Q9H7H0	456 aa	Predicted RBP	3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	EXD2	Q9NVH0	621 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	PTTG2	Q9NZH5	202 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	CNOT2	Q9NZN8	540 aa	Known RBP	3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	NDUFA13	Q9P0J0	144 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	MYEF2	Q9P2K5	600 aa	Known RBP	3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	EXTL2	Q9UBQ6	330 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	MARCO	Q9UEW3	520 aa	Predicted RBP	3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	ZNF443	Q9Y2A4	671 aa	Predicted RBP	3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	SH3GLB1	Q9Y371	365 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	HEATR1	Q9H583	2144 aa	Known RBP	3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	TRAV18	A0A075B6X5	111 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981		A0A1B0GWJ7	208 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	LYNX1	G3V0Z9	82 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	RPL36A-HNRNPH2	H7BZ11	118 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981		M0R233	179 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	SLC22A2	O15244	555 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	SPAG7	O75391	227 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	CRYAA	P02489	173 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	BCHE	P06276	602 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	GPI	P06744	558 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	BPGM	P07738	259 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	MSMB	P08118	114 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	GKN3P	P0CG01	181 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	LYNX1	P0DP58	116 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	B4GALT1	P15291	398 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	UQCRC2	P22695	453 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	FKBP2	P26885	142 aa	Known RBP	3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	HTR2A	P28223	471 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	IL12A	P29459	219 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	SRP14	P37108	136 aa	Known RBP	3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	RPL24	P83731	157 aa	Known RBP	3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	HPCA	P84074	193 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	PPP1R8	Q12972	351 aa	Known RBP	3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	BNIP2	Q12982	314 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	SCGB2A2	Q13296	93 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	MAD2L1BP	Q15013	274 aa	Predicted RBP	3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	GTDC1	Q4AE62	458 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	LIN52	Q52LA3	116 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	GPAT3	Q53EU6	434 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	VAX1	Q5SQQ9	334 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	ATAD3B	Q5T9A4	648 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	C1orf140	Q5VVS0	124 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	MORN5	Q5VZ52	161 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	NIPAL3	Q6P499	406 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	FAM122C	Q6P4D5	195 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	LRRC74B	Q6ZQY2	392 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	AAED1	Q7RTV5	226 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	ABHD12B	Q7Z5M8	362 aa	Predicted RBP	3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	C5orf24	Q7Z6I8	188 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	VRK2	Q86Y07	508 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	ZNF584	Q8IVC4	421 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	CROCCP3	Q8IVE0	287 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	LRRC34	Q8IZ02	419 aa		3.54	□□□□□ -1.84
VPS52-222	ENST00000495981	C10orf111	Q8N326	155 aa		3.54	□□□□□ -1.84

Retrieved 100 of 20,778 RNA–protein pairs in 85 ms