RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 C9orf170A2RU37 121 aa14.61□□□□□ -0.07
CCDC88B-210ENST00000494566 C5orf63A6NC05 138 aa14.61□□□□□ -0.07
CCDC88B-210ENST00000494566 TMEM127O75204 238 aa14.61□□□□□ -0.07
CCDC88B-210ENST00000494566 CCL4P13236 92 aa14.61□□□□□ -0.07
CCDC88B-210ENST00000494566 MECP2P51608 486 aaKnown RBP14.61□□□□□ -0.07
CCDC88B-210ENST00000494566 S100A10P60903 97 aa14.61□□□□□ -0.07
CCDC88B-210ENST00000494566 RBM39Q14498 530 aaKnown RBP14.61□□□□□ -0.07
CCDC88B-210ENST00000494566 HAGHLQ6PII5 290 aaPredicted RBP14.61□□□□□ -0.07
CCDC88B-210ENST00000494566 OR4K17Q8NGC6 315 aa14.61□□□□□ -0.07
CCDC88B-210ENST00000494566 ZNF775Q96BV0 537 aaPredicted RBP14.61□□□□□ -0.07
CCDC88B-210ENST00000494566 ST6GALNAC5Q9BVH7 336 aa14.61□□□□□ -0.07
CCDC88B-210ENST00000494566 BARX1Q9HBU1 254 aaPredicted RBP14.61□□□□□ -0.07
CCDC88B-210ENST00000494566 ACKR4Q9NPB9 350 aa14.61□□□□□ -0.07
CCDC88B-210ENST00000494566 ZNF319Q9P2F9 582 aa14.61□□□□□ -0.07
CCDC88B-210ENST00000494566 NCOR1O75376 2440 aa14.61□□□□□ -0.07
CCDC88B-210ENST00000494566 UBBP0CG47 229 aa14.61□□□□□ -0.07
CCDC88B-210ENST00000494566 UBCP0CG48 685 aaKnown RBP14.61□□□□□ -0.07
CCDC88B-210ENST00000494566 RPS27AP62979 156 aaKnown RBP14.61□□□□□ -0.07
CCDC88B-210ENST00000494566 UBA52P62987 128 aaKnown RBP14.61□□□□□ -0.07
CCDC88B-210ENST00000494566 KLHL24Q6TFL4 600 aa14.61□□□□□ -0.07
CCDC88B-210ENST00000494566 ANGPTL5Q86XS5 388 aa14.61□□□□□ -0.07
CCDC88B-210ENST00000494566 CLRN3Q8NCR9 226 aa14.61□□□□□ -0.07
CCDC88B-210ENST00000494566 OR2M3Q8NG83 312 aa14.61□□□□□ -0.07
CCDC88B-210ENST00000494566 OR51F2Q8NH61 342 aa14.61□□□□□ -0.07
CCDC88B-210ENST00000494566 GNRHR2Q96P88 292 aa14.61□□□□□ -0.07
CCDC88B-210ENST00000494566 SMIM3Q9BZL3 60 aa14.61□□□□□ -0.07
CCDC88B-210ENST00000494566 B3GALT5Q9Y2C3 310 aa14.61□□□□□ -0.07
CCDC88B-210ENST00000494566 OR14I1A6ND48 311 aa14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 TUBAL3A6NHL2 446 aa14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 SULT1C2O00338 296 aa14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 BET1O15155 118 aa14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 SOCS1O15524 211 aa14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 AQP8O94778 261 aa14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 HOXB5P09067 269 aa14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 CBR1P16152 277 aa14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 FSTP19883 344 aa14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 LAP3P28838 519 aa14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 SCAND1P57086 179 aa14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 PCK2Q16822 640 aa14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 ZNF704Q6ZNC4 412 aaPredicted RBP14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 LDLRAD3Q86YD5 345 aa14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 GTPBP8Q8N3Z3 284 aaPredicted RBP14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 PAQR4Q8N4S7 273 aaPredicted RBP14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 TMEM229BQ8NBD8 167 aa14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 IFI44Q8TCB0 444 aa14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 FBXO17Q96EF6 278 aa14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 C1orf198Q9H425 327 aa14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 SULT2B1O00204 365 aa14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 BCL2L11O43521 198 aa14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 TRAF3IP2O43734 574 aaPredicted RBP14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 GP1BAP07359 652 aa14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 HSD11B1P28845 292 aa14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 P2RY4P51582 365 aa14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 TMEM244Q5VVB8 128 aa14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 KCNRGQ8N5I3 272 aa14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 SPACA9Q96E40 222 aaPredicted RBP14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 MRGPRX4Q96LA9 322 aa14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 DUSP23Q9BVJ7 150 aa14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 MRPL13Q9BYD1 178 aaKnown RBP14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 TLNRD1Q9H1K6 362 aa14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 ELL3Q9HB65 397 aaPredicted RBP14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 FBXO9Q9UK97 447 aaPredicted RBP14.6□□□□□ -0.07
CCDC88B-210ENST00000494566 RAB27BO00194 218 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 TOX3O15405 576 aaPredicted RBP14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 FBXO24O75426 580 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 PGA4P0DJD7 388 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 PGA3P0DJD8 388 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 ABHD12BQ7Z5M8 362 aaPredicted RBP14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 NAA40Q86UY6 237 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 RHBDD3Q9Y3P4 386 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 KNG1P01042 644 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 SUMO3P55854 103 aaPredicted RBP14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 TGIF1Q15583 401 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 ZNF813Q6ZN06 617 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 LYG2Q86SG7 212 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 NOXO1Q8NFA2 376 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 THRSPQ92748 146 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 GPER1Q99527 375 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 CMSS1Q9BQ75 279 aaKnown RBP14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 SMOC1Q9H4F8 434 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 CHMP1AQ9HD42 196 aaPredicted RBP14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 NBEAQ8NFP9 2946 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 E9PLN8 166 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 LDLRAD4O15165 306 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 ISG15P05161 165 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 SFTPBP07988 381 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 QDPRP09417 244 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 VSIG8P0DPA2 414 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 RCC1P18754 421 aaPredicted RBP14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 OR3A4PP47883 348 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 NPBWR1P48145 328 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 MMP16P51512 607 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 CLDN6P56747 220 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 ACOT7LQ6ZUV0 252 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 BATF2Q8N1L9 274 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 MR1Q95460 341 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 FOXRED1Q96CU9 486 aaPredicted RBP14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 PHB2Q99623 299 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 SLC25A32Q9H2D1 315 aa14.59□□□□□ -0.07
CCDC88B-210ENST00000494566 OR5AC2Q9NZP5 309 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms