RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ARF1P84077 181 aaKnown RBP9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 BDH1Q02338 343 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 GLO1Q04760 184 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 C4orf17Q53FE4 359 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 C9orf40Q8IXQ3 194 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 OR2G2Q8NGZ5 317 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 TMPRSS13Q9BYE2 586 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 TLNRD1Q9H1K6 362 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 FAM212BQ9NTI7 297 aaPredicted RBP9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 PLA2G3Q9NZ20 509 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SH3BGRL2Q9UJC5 107 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 FBXO7Q9Y3I1 522 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 HEATR5AQ86XA9 2040 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 A0A1W2PPH5 198 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 IFITM5A6NNB3 132 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 TBX19O60806 448 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SEMG1P04279 462 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 TBXA2RP21731 343 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 KCTD18Q6PI47 426 aaPredicted RBP9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 Q6ZRG5 221 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 OVCH1Q7RTY7 1134 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 CPEB2Q7Z5Q1 589 aaKnown RBP9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 RPS19BP1Q86WX3 136 aaKnown RBP9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 OR13C3Q8NGS6 347 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 GPR148Q8TDV2 347 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 OCSTAMPQ9BR26 566 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ZNF275Q9NSD4 429 aaPredicted RBP9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 FREM3P0C091 2139 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 A0A1W2PR77 199 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 TERTO14746 1132 aaKnown RBP9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ARG1P05089 322 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 HLA-DOBP13765 273 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 IL11P20809 199 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 PSMB6P28072 239 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 CASP6P55212 293 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ELFN2Q5R3F8 820 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 C19orf48Q6RUI8 117 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 PLXDC2Q6UX71 529 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SLC16A9Q7RTY1 509 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ABHD12BQ7Z5M8 362 aaPredicted RBP9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 OR1N1Q8NGS0 311 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 OR1J1Q8NGS3 322 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 HPSE2Q8WWQ2 592 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 THRSPQ92748 146 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 PHYHIPLQ96FC7 376 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 CLCC1Q96S66 551 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ESRP2Q9H6T0 727 aaKnown RBP9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 TAF9BQ9HBM6 251 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 MMP26Q9NRE1 261 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SLCO1C1Q9NYB5 712 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 LINC01387J3KSC0 135 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SLC2A5P22732 501 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 RNF151Q2KHN1 245 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ABCA11PQ4W5N1 156 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 DCAF12Q5T6F0 453 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ABHD17BQ5VST6 288 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 IL34Q6ZMJ4 242 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 P4HA3Q7Z4N8 544 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 BCO1Q9HAY6 547 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 MMACHCQ9Y4U1 282 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 KIF26AQ9ULI4 1882 aaPredicted RBP9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 CADP27708 2225 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 IGHV5-10-1A0A0J9YXX1 117 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 P2RY10O00398 339 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 KNG1P01042 644 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 QDPRP09417 244 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 POU3F4P49335 361 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 MEF2DQ14814 521 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SLC18B1Q6NT16 456 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 DCXRQ7Z4W1 244 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 OR1J2Q8NGS2 313 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 DDIT4LQ96D03 193 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 KIRREL1Q96J84 757 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SEC11CQ9BY50 192 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 PLEK2Q9NYT0 353 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 FBXO4Q9UKT5 387 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SIRT4Q9Y6E7 314 aaPredicted RBP9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 NCOR2Q9Y618 2525 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 A0A087WUJ7 227 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ZNF729A6NN14 1252 aaPredicted RBP9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 H7C417 338 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 YIF1AO95070 293 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 PRF1P14222 555 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ABOP16442 354 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 C17orf67Q0P5P2 114 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 OR2T2Q6IF00 324 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 OR2A2Q6IF42 318 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 FLVCR1-AS1Q8TAF5 88 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SCARF2Q96GP6 870 aaPredicted RBP9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SLC25A44Q96H78 314 aaPredicted RBP9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 OR5B12Q96R08 314 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 PRSS27Q9BQR3 290 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 KCNK15Q9H427 330 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 COA4Q9NYJ1 87 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 CHRNA9Q9UGM1 479 aa9.63□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 HSPA12AO43301 675 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ZNF25P17030 456 aaPredicted RBP9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 CFHR1Q03591 330 aa9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 KLF9Q13886 244 aaPredicted RBP9.62□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 RNLSQ5VYX0 342 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms