RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 CXCL2P19875 107 aa10.67□□□□□ -0.7
HDAC6-230ENST00000488543 MSR1P21757 451 aa10.67□□□□□ -0.7
HDAC6-230ENST00000488543 TAS2R20P59543 309 aa10.67□□□□□ -0.7
HDAC6-230ENST00000488543 SGCAQ16586 387 aa10.67□□□□□ -0.7
HDAC6-230ENST00000488543 TSEN15Q8WW01 171 aaKnown RBP10.67□□□□□ -0.7
HDAC6-230ENST00000488543 FCAMRQ8WWV6 532 aa10.67□□□□□ -0.7
HDAC6-230ENST00000488543 ASB5Q8WWX0 329 aa10.67□□□□□ -0.7
HDAC6-230ENST00000488543 MED30Q96HR3 178 aa10.67□□□□□ -0.7
HDAC6-230ENST00000488543 TRAF4Q9BUZ4 470 aaPredicted RBP10.67□□□□□ -0.7
HDAC6-230ENST00000488543 ULBP2Q9BZM5 246 aa10.67□□□□□ -0.7
HDAC6-230ENST00000488543 NELFAQ9H3P2 528 aa10.67□□□□□ -0.7
HDAC6-230ENST00000488543 TCF7L1Q9HCS4 588 aa10.67□□□□□ -0.7
HDAC6-230ENST00000488543 MYEF2Q9P2K5 600 aaKnown RBP10.67□□□□□ -0.7
HDAC6-230ENST00000488543 SCP2D1Q9UJQ7 156 aa10.67□□□□□ -0.7
HDAC6-230ENST00000488543 ARPC4-TTLL3A0A0A6YYG9 625 aa10.67□□□□□ -0.7
HDAC6-230ENST00000488543 MED19A0JLT2 244 aaPredicted RBP10.67□□□□□ -0.7
HDAC6-230ENST00000488543 ZNF878C9JN71 531 aa10.67□□□□□ -0.7
HDAC6-230ENST00000488543 FAM87AP0C7U9 286 aa10.67□□□□□ -0.7
HDAC6-230ENST00000488543 ACHEP22303 614 aa10.67□□□□□ -0.7
HDAC6-230ENST00000488543 DYRK1AQ13627 763 aa10.67□□□□□ -0.7
HDAC6-230ENST00000488543 HACD4Q5VWC8 232 aa10.67□□□□□ -0.7
HDAC6-230ENST00000488543 Q6ZS92 163 aa10.67□□□□□ -0.7
HDAC6-230ENST00000488543 AAED1Q7RTV5 226 aa10.67□□□□□ -0.7
HDAC6-230ENST00000488543 FGD2Q7Z6J4 655 aa10.67□□□□□ -0.7
HDAC6-230ENST00000488543 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.67□□□□□ -0.7
HDAC6-230ENST00000488543 LRRC20Q8TCA0 184 aa10.67□□□□□ -0.7
HDAC6-230ENST00000488543 DVL3Q92997 716 aaPredicted RBP10.67□□□□□ -0.7
HDAC6-230ENST00000488543 ELMOD3Q96FG2 381 aa10.67□□□□□ -0.7
HDAC6-230ENST00000488543 PIPOXQ9P0Z9 390 aa10.67□□□□□ -0.7
HDAC6-230ENST00000488543 COPZ2Q9P299 210 aa10.67□□□□□ -0.7
HDAC6-230ENST00000488543 IGKV3D-15A0A087WSY6 115 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 LOC107986453A0A1B0GWG9 222 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 LINC00862A6NCI5 91 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 GABARAPH6UMI1 98 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 PYCARD-AS1I3L0S3 204 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 TTRP02766 147 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 VSIG10L2P0DP72 767 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 ANOS1P23352 680 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 PSMA6P60900 246 aaKnown RBP10.66□□□□□ -0.7
HDAC6-230ENST00000488543 HIST1H3AP68431 136 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 HIST2H3PS2Q5TEC6 136 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 HIST2H3AQ71DI3 136 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 RHOUQ7L0Q8 258 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.66□□□□□ -0.7
HDAC6-230ENST00000488543 ANGPTL6Q8NI99 470 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 FNDC9Q8TBE3 224 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 THRSPQ92748 146 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 TMEM45BQ96B21 275 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 RBM24Q9BX46 236 aaKnown RBP10.66□□□□□ -0.7
HDAC6-230ENST00000488543 SLITRK2Q9H156 845 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 ZNF224Q9NZL3 707 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 P2RY10O00398 339 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 LMX1BO60663 402 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 ACSM4P0C7M7 580 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 TMPRSS3P57727 454 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 MRPS34P82930 218 aaKnown RBP10.66□□□□□ -0.7
HDAC6-230ENST00000488543 KLHL24Q6TFL4 600 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 ZNF704Q6ZNC4 412 aaPredicted RBP10.66□□□□□ -0.7
HDAC6-230ENST00000488543 OR51D1Q8NGF3 324 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 OR8S1Q8NH09 359 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 S100A16Q96FQ6 103 aaKnown RBP10.66□□□□□ -0.7
HDAC6-230ENST00000488543 PBOV1Q9GZY1 135 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 CLEC4MQ9H2X3 399 aaPredicted RBP10.66□□□□□ -0.7
HDAC6-230ENST00000488543 HHLA2Q9UM44 414 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 LHX6Q9UPM6 363 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 DHDHQ9UQ10 334 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 ATRXP46100 2492 aa10.66□□□□□ -0.7
HDAC6-230ENST00000488543 RP1L1Q8IWN7 2480 aaPredicted RBP10.66□□□□□ -0.7
HDAC6-230ENST00000488543 ARID1AO14497 2285 aa10.65□□□□□ -0.7
HDAC6-230ENST00000488543 A0A1B0GVI7 797 aa10.65□□□□□ -0.7
HDAC6-230ENST00000488543 ANKRD20A5PA0PJZ0 165 aa10.65□□□□□ -0.7
HDAC6-230ENST00000488543 M0R233 179 aa10.65□□□□□ -0.7
HDAC6-230ENST00000488543 CTDSPLO15194 276 aa10.65□□□□□ -0.7
HDAC6-230ENST00000488543 IGFBP3P17936 291 aaPredicted RBP10.65□□□□□ -0.7
HDAC6-230ENST00000488543 ZNF84P51523 738 aa10.65□□□□□ -0.7
HDAC6-230ENST00000488543 SEZ6L2Q6UXD5 910 aa10.65□□□□□ -0.7
HDAC6-230ENST00000488543 MEIOBQ8N635 442 aa10.65□□□□□ -0.7
HDAC6-230ENST00000488543 GINS4Q9BRT9 223 aa10.65□□□□□ -0.7
HDAC6-230ENST00000488543 RABL2AQ9UBK7 228 aaPredicted RBP10.65□□□□□ -0.7
HDAC6-230ENST00000488543 ITPR1Q14643 2758 aa10.65□□□□□ -0.7
HDAC6-230ENST00000488543 ANXA2P2A6NMY6 339 aa10.65□□□□□ -0.7
HDAC6-230ENST00000488543 TMEM127O75204 238 aa10.65□□□□□ -0.7
HDAC6-230ENST00000488543 RLN1P04808 185 aa10.65□□□□□ -0.7
HDAC6-230ENST00000488543 ANXA2P07355 339 aaKnown RBP10.65□□□□□ -0.7
HDAC6-230ENST00000488543 UBCP0CG48 685 aaKnown RBP10.65□□□□□ -0.7
HDAC6-230ENST00000488543 FSTP19883 344 aa10.65□□□□□ -0.7
HDAC6-230ENST00000488543 ART1P52961 327 aa10.65□□□□□ -0.7
HDAC6-230ENST00000488543 AANATQ16613 207 aa10.65□□□□□ -0.7
HDAC6-230ENST00000488543 PCGF3Q3KNV8 242 aa10.65□□□□□ -0.7
HDAC6-230ENST00000488543 TMEM244Q5VVB8 128 aa10.65□□□□□ -0.7
HDAC6-230ENST00000488543 UNQ6494/PRO21346Q6UXR6 183 aa10.65□□□□□ -0.7
HDAC6-230ENST00000488543 WDYHV1Q96HA8 205 aa10.65□□□□□ -0.7
HDAC6-230ENST00000488543 CXorf58Q96LI9 332 aa10.65□□□□□ -0.7
HDAC6-230ENST00000488543 NPDC1Q9NQX5 325 aaPredicted RBP10.65□□□□□ -0.7
HDAC6-230ENST00000488543 UBQLN2Q9UHD9 624 aa10.65□□□□□ -0.7
HDAC6-230ENST00000488543 A0A1B0GTI1 187 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 LOC105371267A0A1B0GV96 52 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 ACTL6AO96019 429 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 CTSSP25774 331 aa10.64□□□□□ -0.71
HDAC6-230ENST00000488543 CFPP27918 469 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms