RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 PITPNAQ00169 270 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 SIGLEC14Q08ET2 396 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 ZNF816Q0VGE8 651 aaPredicted RBP1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 PNOCQ13519 176 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 TSC22D1Q15714 1073 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 C5orf64Q2M2E5 130 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 SLC25A34Q6PIV7 304 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 MRPL21Q7Z2W9 205 aaKnown RBP1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 CALHM3Q86XJ0 350 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 OSR2Q8N2R0 312 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 TRAM1L1Q8N609 369 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 ZNF645Q8N7E2 425 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 ZNF615Q8N8J6 731 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 UBAC2Q8NBM4 344 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 PROKR2Q8NFJ6 384 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 TTLQ8NG68 377 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 ISOC2Q96AB3 205 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 SLC25A46Q96AG3 418 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 CERS2Q96G23 380 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 C18orf15Q96N68 181 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 NAP1L5Q96NT1 182 aaPredicted RBP1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 DOK1Q99704 481 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 RSG1Q9BU20 258 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 BLZF1Q9H2G9 400 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 EXOSC4Q9NPD3 245 aaKnown RBP1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 CHRAC1Q9NRG0 131 aa1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 COL27A1Q8IZC6 1860 aaPredicted RBP1.6□□□□□ -2.15
CCDC88A-212ENST00000474059 NEURL4Q96JN8 1562 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 TRAV40A0A0B4J280 105 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 IGHV7-4-1A0A0J9YVY3 117 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 SLC22A20A6NK97 555 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 OR5H1A6NKK0 313 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 ZNF850A8MQ14 1090 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 TAAR5O14804 337 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 RRP8O43159 456 aaKnown RBP1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 RAD1O60671 282 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 EIF1BO60739 113 aaKnown RBP1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 SLC19A2O60779 497 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 HSBP1O75506 76 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 SERPINB7O75635 380 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 RCBTB2O95199 551 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 PAHP00439 452 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 IGHV3-11P01762 117 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 CATP04040 527 aaKnown RBP1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 SRMP19623 302 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 ME2P23368 584 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 EIF1P41567 113 aaKnown RBP1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 BCAP31P51572 246 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 LCN2P80188 198 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 PPIDQ08752 370 aaKnown RBP1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 AP1ARQ63HQ0 302 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 H3F3CQ6NXT2 135 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 RTL4Q6ZR62 310 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 LINC00336Q6ZUF6 198 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 HMGN2P46Q86SG4 172 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 RAB43Q86YS6 212 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 FAM184AQ8NB25 1140 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 C19orf18Q8NEA5 215 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 OR1J4Q8NGS1 313 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 RXFP4Q8TDU9 374 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 C17orf50Q8WW18 174 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 PIH1D2Q8WWB5 315 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 ASZ1Q8WWH4 475 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 GHSRQ92847 366 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 KIAA1143Q96AT1 154 aaPredicted RBP1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 RCN3Q96D15 328 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 SCGB3A2Q96PL1 93 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 TBL1YQ9BQ87 522 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 TOLLIPQ9H0E2 274 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 C1orf198Q9H425 327 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 RGCCQ9H4X1 137 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 CYP3A43Q9HB55 503 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 FBXO6Q9NRD1 293 aaPredicted RBP1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 ENOPH1Q9UHY7 261 aa1.59□□□□□ -2.15
CCDC88A-212ENST00000474059 YEATS2Q9ULM3 1422 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 CABIN1Q9Y6J0 2220 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 IGLV2-18A0A075B6J9 118 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 IGLV3-12A0A075B6K2 115 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 TRAV6A0A075B6T7 132 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 CENPVL3A0A0U1RRI6 287 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 KIR2DS1A0A191URI9 304 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 H3BN98 237 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 RPL36A-HNRNPH2H7BZ11 118 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 CTNSO60931 367 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 RBBP9O75884 186 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 TGM6O95932 706 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 MT-ND4P03905 459 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 THRAP10827 490 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 GZMAP12544 262 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 IL1RNP18510 177 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 PMCHP20382 165 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 MSR1P21757 451 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 GABRR2P28476 465 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 CFHR2P36980 270 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 UBE2E1P51965 193 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 OR2B8PP59922 312 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 YWHAEP62258 255 aaKnown RBP1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 ZNF616Q08AN1 781 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 PIGHQ14442 188 aaPredicted RBP1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 HADHQ16836 314 aaKnown RBP1.58□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms