RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 SPANXA1Q9NS26 97 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 RASL12Q9NYN1 266 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 TMEM181Q9P2C4 612 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 C14orf166Q9Y224 244 aaKnown RBP4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 TP53TG1Q9Y2A0 90 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 SIGLEC9Q9Y336 463 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 EXOSC1Q9Y3B2 195 aaKnown RBP4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 OARD1Q9Y530 152 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 RIMS1Q86UR5 1692 aaKnown RBP4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 SYNMO15061 1565 aa4.02□□□□□ -1.77
CCDC88A-210ENST00000468534 IGHV4OR15-8A0A075B7B6 117 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 A0A0G2JMP0 313 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 TRBV4-1A0A0J9YWV2 114 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 ZNF816-ZNF321PA0A0X1KG74 233 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 A0A1B0GW55 424 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 TCRBV9S1A1TA0A576 114 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 ANKRD63C9JTQ0 380 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 WNT9BO14905 357 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 SLC22A5O76082 557 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 LSM8O95777 96 aaKnown RBP4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 GCGP01275 180 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 DUX4L2P0CJ85 424 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 DUX4L3P0CJ86 424 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 DUX4L4P0CJ87 422 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 DUX4L5P0CJ88 424 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 DUX4L6P0CJ89 424 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 DUX4L7P0CJ90 424 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 IGHV4-30-4P0DP06 118 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 OMGP23515 440 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 ZFP36L2P47974 494 aaKnown RBP4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 PSMD8P48556 350 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 SERPINB10P48595 397 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 GSK3BP49841 420 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 EFNA3P52797 238 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 CRIP2P52943 208 aaPredicted RBP4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 PDX1P52945 283 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 HCCSP53701 268 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 STXBP1P61764 594 aaKnown RBP4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 HPCAP84074 193 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 BCL2L1Q07817 233 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 PUDPQ08623 228 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 TAF10Q12962 218 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 UNC119Q13432 240 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 FAM53BQ14153 422 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 TFDP2Q14188 446 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 GGTLC2Q14390 218 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 ZNF235Q14590 738 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 TRAM1Q15629 374 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 PRSS8Q16651 343 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 HIST3H3Q16695 136 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 C4orf26Q17RF5 130 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 LRRC75BQ2VPJ9 315 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 LRRC37A5PQ49AS3 106 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 FAM78BQ5VT40 261 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 UBE2UQ5VVX9 321 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 DUX4L9Q6RFH8 374 aaPredicted RBP4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 GALNT10Q86SR1 603 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 ISCA2Q86U28 154 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 LRRC28Q86X40 367 aaPredicted RBP4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 CATSPER3Q86XQ3 398 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 VKORC1L1Q8N0U8 176 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 CA13Q8N1Q1 262 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 CADM2Q8N3J6 435 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 ZNF740Q8NDX6 193 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 OR4M2Q8NGB6 313 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 OR5B3Q8NH48 314 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 OR5R1Q8NH85 324 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 SLC7A13Q8TCU3 470 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 MAPK15Q8TD08 544 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 DOK4Q8TEW6 326 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 PIK3R3Q92569 461 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 MRPS31Q92665 395 aaKnown RBP4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 TOMM40LQ969M1 308 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 MRPL24Q96A35 216 aaKnown RBP4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 RAB3CQ96E17 227 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 CAPNS2Q96L46 248 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 ZNF681Q96N22 645 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 SIGMAR1Q99720 223 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 AGMATQ9BSE5 352 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 CABLES2Q9BTV7 478 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 MND1Q9BWT6 205 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 MS4A8Q9BY19 250 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 ACOT13Q9NPJ3 140 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 OLFML3Q9NRN5 406 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 GALPQ9UBC7 116 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 DUX4Q9UBX2 424 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 ANGPT4Q9Y264 503 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 KCNIP3Q9Y2W7 256 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 AMDHD2Q9Y303 409 aa4.01□□□□□ -1.77
CCDC88A-210ENST00000468534 SYNJ2O15056 1496 aa4□□□□□ -1.77
CCDC88A-210ENST00000468534 NUP153P49790 1475 aaKnown RBP4□□□□□ -1.77
CCDC88A-210ENST00000468534 IGHV2-70DA0A0C4DH43 119 aa4□□□□□ -1.77
CCDC88A-210ENST00000468534 A0A1W2PRG6 482 aa4□□□□□ -1.77
CCDC88A-210ENST00000468534 FAM92AA1XBS5 289 aa4□□□□□ -1.77
CCDC88A-210ENST00000468534 DHRS7CA6NNS2 312 aa4□□□□□ -1.77
CCDC88A-210ENST00000468534 TMEM178BH3BS89 294 aa4□□□□□ -1.77
CCDC88A-210ENST00000468534 H7C2Y5 167 aa4□□□□□ -1.77
CCDC88A-210ENST00000468534 K7ERI5 159 aa4□□□□□ -1.77
CCDC88A-210ENST00000468534 TAAR5O14804 337 aa4□□□□□ -1.77
CCDC88A-210ENST00000468534 PHYHO14832 338 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms