RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 RIN1Q13671 783 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 PPA1Q15181 289 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 GALNT16Q8N428 558 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 OR11G2Q8NGC1 345 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 ROBO4Q8WZ75 1007 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 MCHR2Q969V1 340 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 CHST6Q9GZX3 395 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 ADAM19Q9H013 955 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 BORCS7-ASMTA0A0B4J1R7 106 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 LOC102725191A0A1B0GVB3 256 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 VAMP5O95183 116 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 CCL4P13236 92 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 IGLV3-21P80748 117 aaPredicted RBP10.36□□□□□ -0.75
NPHP4-204ENST00000460696 MC2RQ01718 297 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 DHRS2Q13268 280 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 ZNF626Q68DY1 528 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 MAP6Q96JE9 813 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 NOSIPQ9Y314 301 aaKnown RBP10.36□□□□□ -0.75
NPHP4-204ENST00000460696 PLXNB3Q9ULL4 1909 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 A0A1W2PR77 199 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 FAM166BA8MTA8 275 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 SULT1C2O00338 296 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 B4GALT1P15291 398 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 RIPPLY1Q0D2K3 151 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 FZD5Q13467 585 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 IAH1Q2TAA2 248 aaPredicted RBP10.36□□□□□ -0.75
NPHP4-204ENST00000460696 TMEM229BQ8NBD8 167 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 ASB10Q8WXI3 467 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 ARL11Q969Q4 196 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 C1QTNF6Q9BXI9 259 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 CA10Q9NS85 328 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 MCTS1Q9ULC4 181 aaKnown RBP10.36□□□□□ -0.75
NPHP4-204ENST00000460696 PLXNA4Q9HCM2 1894 aa10.36□□□□□ -0.75
NPHP4-204ENST00000460696 A6NLC8 198 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 BET1O15155 118 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 PHLDA2Q53GA4 152 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 TRILQ7L0X0 811 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 PXT1Q8NFP0 134 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 SEMA6DQ8NFY4 1073 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 SLC26A10Q8NG04 563 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 OR11H4Q8NGC9 324 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 AKR7LQ8NHP1 331 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 CD300LFQ8TDQ1 290 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 NICN1Q9BSH3 213 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 EIF5A2Q9GZV4 153 aaKnown RBP10.35□□□□□ -0.75
NPHP4-204ENST00000460696 ZNF71Q9NQZ8 489 aaPredicted RBP10.35□□□□□ -0.75
NPHP4-204ENST00000460696 BOKQ9UMX3 212 aaPredicted RBP10.35□□□□□ -0.75
NPHP4-204ENST00000460696 LIPT2A6NK58 231 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 TMEM200CA6NKL6 621 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 CD96P40200 585 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 TGIF1Q15583 401 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 ACTBL2Q562R1 376 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 Q5BKY6 102 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 PXDC1Q5TGL8 231 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 DEGS2Q6QHC5 323 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 FAM122BQ7Z309 247 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 OR4D6Q8NGJ1 314 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 NUBPLQ8TB37 319 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 LIN37Q96GY3 246 aaPredicted RBP10.35□□□□□ -0.75
NPHP4-204ENST00000460696 ZNF416Q9BWM5 594 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 NMNAT2Q9BZQ4 307 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 MOB1AQ9H8S9 216 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 BPNT1O95861 308 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 IGKV3-11P04433 115 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 S100A9P06702 114 aaKnown RBP10.35□□□□□ -0.75
NPHP4-204ENST00000460696 FTH1P19P0C7X4 201 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 PATE4P0C8F1 98 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 MGMTP16455 207 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 PRKACBP22694 351 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 RPS4XP62701 263 aaKnown RBP10.35□□□□□ -0.75
NPHP4-204ENST00000460696 WDR74Q6RFH5 385 aaPredicted RBP10.35□□□□□ -0.75
NPHP4-204ENST00000460696 WDR5BQ86VZ2 330 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 CATSPERDQ86XM0 798 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 CARFQ8N187 725 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 EXD3Q8N9H8 876 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 IL1F10Q8WWZ1 152 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 RGP1Q92546 391 aaPredicted RBP10.35□□□□□ -0.75
NPHP4-204ENST00000460696 MRPL22Q9NWU5 206 aaKnown RBP10.35□□□□□ -0.75
NPHP4-204ENST00000460696 KCNS2Q9ULS6 477 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 CSAG2Q9Y5P2 127 aa10.35□□□□□ -0.75
NPHP4-204ENST00000460696 ARGFXA6NJG6 315 aa10.34□□□□□ -0.75
NPHP4-204ENST00000460696 LMX1BO60663 402 aa10.34□□□□□ -0.75
NPHP4-204ENST00000460696 DXOO77932 396 aaKnown RBP10.34□□□□□ -0.75
NPHP4-204ENST00000460696 IL32P24001 234 aa10.34□□□□□ -0.75
NPHP4-204ENST00000460696 EFNA3P52797 238 aa10.34□□□□□ -0.75
NPHP4-204ENST00000460696 PCBD1P61457 104 aa10.34□□□□□ -0.75
NPHP4-204ENST00000460696 RPS18P62269 152 aaKnown RBP10.34□□□□□ -0.75
NPHP4-204ENST00000460696 RPS11P62280 158 aaKnown RBP eCLIP10.34□□□□□ -0.75
NPHP4-204ENST00000460696 DEFB109BQ30KR1 87 aa10.34□□□□□ -0.75
NPHP4-204ENST00000460696 OGFOD3Q6PK18 319 aa10.34□□□□□ -0.75
NPHP4-204ENST00000460696 LIPHQ8WWY8 451 aa10.34□□□□□ -0.75
NPHP4-204ENST00000460696 SEH1LQ96EE3 360 aa10.34□□□□□ -0.75
NPHP4-204ENST00000460696 MED30Q96HR3 178 aa10.34□□□□□ -0.75
NPHP4-204ENST00000460696 THOC3Q96J01 351 aaKnown RBP10.34□□□□□ -0.75
NPHP4-204ENST00000460696 RTN4RQ9BZR6 473 aa10.34□□□□□ -0.75
NPHP4-204ENST00000460696 ZNF230Q9UIE0 474 aaPredicted RBP10.34□□□□□ -0.75
NPHP4-204ENST00000460696 MRPS18BQ9Y676 258 aaKnown RBP10.34□□□□□ -0.75
NPHP4-204ENST00000460696 A0A096LPE4 126 aa10.34□□□□□ -0.75
NPHP4-204ENST00000460696 A0A1W2PPZ6 126 aa10.34□□□□□ -0.75
NPHP4-204ENST00000460696 OR5H15A6NDH6 313 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms